Log In
Sign Up
about
faq
Ask a question
Latest
News
Jobs
Tutorials
Tags
Users
New Post
Latest
News
Jobs
Tutorials
Tags
Users
Log In
Sign Up
About
Limit
all time
today
this week
this month
this year
Unanswered
All posts
Sort
Update
Answers
Bookmarks
Creation
Replies
Rank
Views
Votes
Showing :
MethylMix
•
reset
0
votes
0
replies
776
views
How can I download Methylation data for MethylMix package. (unusual error popped)
MethylMix
3.1 years ago
Shloka Negi
• 0
0
votes
1
reply
846
views
how to paralelize this R script in a HPC cluster using Slurm Workload Manager?
methylation
epigenomics
slurm
mpi
methylmix
updated 3.7 years ago by
Kevin Blighe
★ 3.9k • written 3.7 years ago by
parra.sev
▴ 20
0
votes
1
reply
771
views
stuck in "Finding nonparametric adjustments" with MethylMix package.
MethylMix
updated 3.8 years ago by
Kevin Blighe
★ 3.9k • written 3.8 years ago by
sdjnchen
• 0
0
votes
0
replies
662
views
Methylmix results are a bit different from beta values results
cancer
methylmix
methylation
betavalues
DMvalues
4.3 years ago
luciomora8
• 0
1
vote
2
replies
907
views
How to handle big data sets (>10GB) in Bioconductor packages?
big data
methylmix
memory problem
updated 5.6 years ago by
Martin Morgan
25k • written 5.6 years ago by
perdedorium
• 0
0
votes
0
replies
774
views
MethylMix takes so much time for preprocess step
MethylMix
5.8 years ago
serbulentu
• 0
6 results • Page
1 of 1
Recent ...
Replies
Comment: A ComBat-seq issue: the covariates are confounded
by
W. Evan Johnson
▴ 850
This is only partially confounded because there is overlap between the batches -- they both have GFP controls that can be used to remove ba…
Answer: Different number of exons in reference genome affects DEXSeq analysis
by
Alejandro Reyes
★ 1.9k
Likely the new annotation that you are using has more annotated isoforms, and thus the exons are splitted into more disjoint exonic bins. I…
Answer: Adding columns to DEXSeqResults object
by
Alejandro Reyes
★ 1.9k
I'd have a look into the match function, that could give you a mapping between the ids in the dxr1 object and your data frame of gene symbo…
Answer: rlog transformation
by
Michael Love
41k
It is dependent on the other samples in the dataset.
Answer: ONT long-read RNA sequencing - data analysis options
by
Michael Love
41k
*"This worked really well for brain but has not work as well for lung as I get #N/A for many padj"* See the vignette for the cause of th…
Votes
Comment: DEXSeq DEXSeqDataSet count matrix duplication
Comment: Error in champ.load(): The following specified files do not exist
Answer: Error in read.metharray(basenames = files, extended = extended, verbose = verbos
Using GRanges and IRanges to simply get all chromosome data
A: Using GRanges and IRanges to simply get all chromosome data
Awards
• All
Popular Question
to
W. Evan Johnson
▴ 850
Popular Question
to
Alejandro Reyes
★ 1.9k
Popular Question
to
shepherl
3.8k
Popular Question
to
Alessia
• 0
Popular Question
to
paria.alipour
• 0
Locations
• All
France,
just now
Melbourne, Australia,
1 minute ago
United States,
2 minutes ago
United States,
4 minutes ago
France,
11 minutes ago
Traffic: 964 users visited in the last hour
Content
Search
Users
Tags
Badges
Help
About
FAQ
Access
RSS
API
Stats
Use of this site constitutes acceptance of our
User Agreement and Privacy Policy
.
Powered by the
version 2.3.6