Bioconductor Methylmix

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MethylMix

2.6 years ago Shloka Negi • 0

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methylation epigenomics slurm mpi methylmix

updated 3.2 years ago by Kevin Blighe 3.8k • written 3.2 years ago by parra.sev ▴ 20

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MethylMix

updated 3.2 years ago by Kevin Blighe 3.8k • written 3.2 years ago by sdjnchen • 0

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cancer methylmix methylation betavalues DMvalues

3.7 years ago luciomora8 • 0

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big data methylmix memory problem

updated 5.1 years ago by Martin Morgan 25k • written 5.1 years ago by perdedorium • 0

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MethylMix

5.2 years ago serbulentu • 0

6 results • Page 1 of 1

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Comment: tximport error: vroom by RLiu ▴ 10

Thank you for providing this clue. I never installed vroom manually. I guess it is one of dependences for tximport that automatically insta…

Comment: tximport error: vroom by RLiu ▴ 10

I checked that all `quant.sf`s have the same line number (42013 lines in each file), which is different from tx2gene (81493 lines).

Comment: tximport error: vroom by Benji Bromberg • 0

I also ran into this same issue today. All my quant.sf files are the same length, were generated within the last month, [do not contain com…

Answer: DiffBind returns different grey lists every time I run dba.blacklist even if I s by James W. MacDonald 63k

Using `.set.seed` only sets the seed for the first call to any random number generation, after which the seed is incremented. As an example…

Comment: Point mutation to corresponding amino acid by jtremblay514 • 0

You can have a look at the transvar software for this. While not in bioconductor, it works well.

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tximport error: vroom

Comment: Speeding up of DelayedArray::write_block()

Unclear of calculating correlations with case+control samples together

Answer: Error MakeOrgPackagefromNCBI

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