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methylmix
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How can I download Methylation data for MethylMix package. (unusual error popped)
MethylMix
2.6 years ago
Shloka Negi
• 0
0
votes
1
reply
660
views
how to paralelize this R script in a HPC cluster using Slurm Workload Manager?
methylation
epigenomics
slurm
mpi
methylmix
updated 3.2 years ago by
Kevin Blighe
3.8k • written 3.2 years ago by
parra.sev
▴ 20
0
votes
1
reply
594
views
stuck in "Finding nonparametric adjustments" with MethylMix package.
MethylMix
updated 3.2 years ago by
Kevin Blighe
3.8k • written 3.2 years ago by
sdjnchen
• 0
0
votes
0
replies
509
views
Methylmix results are a bit different from beta values results
cancer
methylmix
methylation
betavalues
DMvalues
3.7 years ago
luciomora8
• 0
1
vote
2
replies
732
views
How to handle big data sets (>10GB) in Bioconductor packages?
big data
methylmix
memory problem
updated 5.1 years ago by
Martin Morgan
25k • written 5.1 years ago by
perdedorium
• 0
0
votes
0
replies
633
views
MethylMix takes so much time for preprocess step
MethylMix
5.2 years ago
serbulentu
• 0
6 results • Page
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Comment: tximport error: vroom
by
RLiu
▴ 10
Thank you for providing this clue. I never installed vroom manually. I guess it is one of dependences for tximport that automatically insta…
Comment: tximport error: vroom
by
RLiu
▴ 10
I checked that all `quant.sf`s have the same line number (42013 lines in each file), which is different from tx2gene (81493 lines).
Comment: tximport error: vroom
by
Benji Bromberg
• 0
I also ran into this same issue today. All my quant.sf files are the same length, were generated within the last month, [do not contain com…
Answer: DiffBind returns different grey lists every time I run dba.blacklist even if I s
by
James W. MacDonald
63k
Using `.set.seed` only sets the seed for the first call to any random number generation, after which the seed is incremented. As an example…
Comment: Point mutation to corresponding amino acid
by
jtremblay514
• 0
You can have a look at the transvar software for this. While not in bioconductor, it works well.
Votes
tximport error: vroom
Comment: Speeding up of DelayedArray::write_block()
Comment: Speeding up of DelayedArray::write_block()
Unclear of calculating correlations with case+control samples together
Answer: Error MakeOrgPackagefromNCBI
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