Bioconductor Multiple sequence alignment

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MSA R Multiple sequence alignment consensus sequence

updated 4.4 years ago by ulrich.bodenhofer ▴ 20 • written 4.4 years ago by Yuchen Chang • 0

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snp multiple sequence alignment fasta Tutorial

updated 5.0 years ago by Martin Morgan 25k • written 5.0 years ago by pltbiotech_tkarthi • 0

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msa msaprettyprint() multiple sequence alignment

6.6 years ago map2085 ▴ 40

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Comment: HTSeqGenie runs very slow by zh9118 • 0

I found that it's always the last chunk that took time forever, even though the last chunk is the smallest one. ![enter image description …

Answer: Error MakeOrgPackagefromNCBI by James W. MacDonald 63k

You will rarely find a particular strain in any annotation data, and instead you should use the 'main' taxon ID, which for *A. baumannii* h…

Comment: Setting up a multi-factor experiement by john.briseno • 0

thanks, will do! we work with a non-model organism, but perhaps the folks who do our genomics/sequencing have some input.

Comment: Mixed up sample info with plotPCA by Michael Love 40k

Just as a note, if the sample info table had been named (that is `rownames(sampleInfo)` not `NULL`, DESeq2 would have been able to detect t…

Comment: Mixed up sample info with plotPCA by sara.jacobson • 0

You were correct. The order of my samples in my sample info-file did not match the order of the samples in my count data file. Thank you!

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Comment: Mixed up sample info with plotPCA

Answer: Setting up a multi-factor experiement

Answer: Mouse to Human Genes using bioconductor

Mouse to Human Genes using bioconductor

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