Showing : MSA • reset
0
votes
1
reply
155
views
Msa package clustal-omega
msa
updated 6 weeks ago by ▴ 170 • written 6 weeks ago by • 0
0
votes
0
replies
68
views
Difficulty with msaConvert function in R package
ape msa
8 weeks ago João Tadeu • 0
0
votes
0
replies
61
views
Can I quantify the number of mismatches post alignment?
msa
10 weeks ago Field -Ye • 0
1
vote
5
replies
729
views
MSA package fails to be installed - installation of package ‘msa’ had non-zero exit status
msa MultipleSequenceAlignment
updated 3 months ago by ▴ 290 • written 10 months ago by • 0
8
votes
8
replies
1.1k
views
msa compilation failure - multiple definition of `GC_jmp_buf' in gc-7.2
software error msa
updated 3 months ago by ▴ 290 • written 18 months ago by ▴ 40
0
votes
1
reply
243
views
msaprettyprint
msa prettyprint
updated 8 months ago by ▴ 290 • written 8 months ago by • 0
1
vote
3
replies
709
views
msaprettyprint error in R
msa
updated 13 months ago by ▴ 290 • written 17 months ago by • 0
0
votes
0
replies
133
views
[Function Request]converts a AA-based fasta alignment (that includes aa fasta sequences of different strains) into a vcf file
msa
14 months ago yeli7068 • 0
0
votes
3
replies
456
views
DECIPHER save alignement in outputs
msa decipher output prettyPrint
updated 16 months ago by ▴ 290 • written 16 months ago by • 0
0
votes
0
replies
246
views
msa: cannot load library silently
msa
17 months ago richel • 0
0
votes
6
replies
733
views
msa: object 'msaClustalW' of mode 'function' was not found
msa
updated 17 months ago by ▴ 290 • written 17 months ago by • 0
0
votes
3
replies
377
views
Align a list of DNA sequence, extract only positions with SNPs for conpact view?
msa Biostrings
updated 21 months ago by ▴ 290 • written 21 months ago by ▴ 70
1
vote
1
reply
228
views
Error using r msa::msaClustalW in parallel
software error msa
updated 24 months ago by ▴ 290 • written 24 months ago by ▴ 10
0
votes
1
reply
1.2k
views
Seeking help deploying Shiny application to RStudio Connect with Bioconductor package
Rstudio Connect msa bios2mds BiocManager Bioconductor
2.6 years ago morlenrp • 0
0
votes
1
reply
345
views
Can any of the existing `MSA` packages be used/adapted to visualize a pre-aligned fasta or tsv file (e.g., `kalign` output)?
msa phylogeny
updated 2.7 years ago by ▴ 20 • written 2.7 years ago by • 0
1
vote
2
replies
360
views
What is the '?' in the result of R package 'msa' function 'msa'?
MSA R Multiple sequence alignment consensus sequence
updated 2.7 years ago by ▴ 20 • written 2.7 years ago by • 0
0
votes
9
replies
832
views
visualizing alignment without realignment
msa alignment visualization
updated 2.9 years ago by 25k • written 2.9 years ago by • 0
1
vote
2
replies
556
views
Package for custom visualization of multiple sequence alignment
MSA visualization
updated 3.3 years ago by ▴ 20 • written 3.3 years ago by • 0
0
votes
4
replies
557
views
Error: could not find function "msaConvert"
msa
updated 3.6 years ago by ▴ 290 • written 3.6 years ago by • 0
0
votes
1
reply
425
views
Defining populations in a msaClustalOmega alignment
msa
3.6 years ago cav3gh • 0
2
votes
2
replies
1.8k
views
How to get msa output in fasta format
msa msaprettyprint()
updated 3.7 years ago by ▴ 290 • written 3.7 years ago by • 0
2
votes
2
replies
514
views
seqfault wiht msa
msa segfault
3.7 years ago jmh5ad ▴ 20
0
votes
1
reply
766
views
Status 1 error when using msaPrettyPrint() to make pdfs with MsaAAMultipleAlignment
msaprettyprint() latex pdf msa
updated 4.0 years ago by ▴ 290 • written 4.0 years ago by • 0
0
votes
1
reply
751
views
Error in .Primitive("c")(<S4 object of class "IRanges">) : could not find symbol "recursive" in environment of the generic function running msa
msa iranges
updated 4.0 years ago by ▴ 290 • written 4.0 years ago by • 0
2
votes
11
replies
2.5k
views
How do I extract the complete MsaAAMultipleAlignment object to a file
msaprettyprint() msa multiplealignment export
updated 4.0 years ago by ▴ 290 • written 4.0 years ago by ★ 1.5k
2
votes
3
replies
919
views
running msa (msa) aborts R session
msa alignment r software error
updated 4.1 years ago by ▴ 290 • written 4.1 years ago by • 0
3
votes
2
replies
1.1k
views
Installation of MSA package fails
MSA package installation software error compilation error
updated 4.1 years ago by ▴ 290 • written 4.1 years ago by ▴ 10
2
votes
2
replies
1.0k
views
msa: How to obtain a subset of an alignment
msa Biostrings MultipleAlignment
updated 4.4 years ago by ▴ 290 • written 4.4 years ago by ▴ 10
4
votes
5
replies
1.1k
views
Can't install msa on FreeBSD
software error FreeBSD msa
4.4 years ago spcohen2 ▴ 20
1
vote
2
replies
705
views
untranslate AAstringset {Biostrings} or MsaAAMultipleAlignment {msa}
biostrings msa
4.5 years ago multipleseqs • 0
8
votes
14
replies
7.4k
views
Using msa msaPrettyPrint(): saving multiple alignement fasta file
msa msaprettyprint() fasta
updated 4.7 years ago by • 0 • written 5.0 years ago by ▴ 50
2
votes
5
replies
1.0k
views
Multiple Sequence Alignment using DNA sequence
msa decipher
4.7 years ago bbista91 ▴ 10
2
votes
2
replies
1.5k
views
Error with MSA package - could not find symbol "recursive"
msa
updated 4.9 years ago by 25k • written 4.9 years ago by ▴ 10
2
votes
1
reply
838
views
Outputting a multiple alignment to file error: could not find function write.XStringSet
msa
updated 4.9 years ago by ▴ 290 • written 4.9 years ago by ▴ 10
1
vote
2
replies
749
views
msaPrettyPrint cannot handle long sequences?
msa msaprettyprint() multiple sequence alignment
4.9 years ago map2085 ▴ 40
9
votes
14
replies
2.0k
views
msa package installation problem
msa
updated 4.9 years ago by ▴ 10 • written 5.1 years ago by ▴ 120
2
votes
9
replies
1.9k
views
msa alignement: sorted sequences by sequence name
msa alignement output sorted
5.0 years ago Olorin ▴ 50
1
vote
1
reply
3.0k
views
Using msa msaPrettyPrint(): issues with latex
msa latex msaPrettyPrint()
5.0 years ago Olorin ▴ 50
0
votes
0
replies
761
views
Using readAAMultipleAlignment to parse CMFinder Stockholm format alignments
biostrings stockholm msa cmfinder
5.1 years ago Keith Hughitt ▴ 150
0
votes
1
reply
673
views
How to draw phylogeny tree for long genomes? ('msa' taking much time)
msa phylogenetic
updated 5.1 years ago by ▴ 290 • written 5.2 years ago by ▴ 50
0
votes
1
reply
1.2k
views
Error: could not find function "msaConvert"
msa software error
updated 5.3 years ago by ▴ 290 • written 5.3 years ago by • 0
0
votes
3
replies
875
views
installation failed when trying msa
msa
updated 5.3 years ago by ▴ 290 • written 5.3 years ago by • 0
0
votes
1
reply
813
views
msa memory limitation
msa
updated 5.6 years ago by ▴ 290 • written 5.6 years ago by ▴ 40
43 results • Page 1 of 1
Recent ...
Replies
Answer: fgsea not downloading due to new r version. Is there a way around this? by James W. MacDonald 58k
That's probably just a blip in your connection or something. The `fgsea` package is definitely available, so I would just try again. You mi…
Comment: WGCNA: Obtaining a consensus network from sampledBlockwiseModules function outpu by Peter Langfelder ★ 2.6k
Not sure if this is the best way to do it, but for an individual vector of module labels, you can use something like `inSameModule = outer…
Comment: WGCNA network creation error by Peter Langfelder ★ 2.6k
Try running `adj = adjacency(datExpr)` (replace datExpr with whatever object holds your expression data). See if you have any missing or no…
Answer: MATRIXEQTL: Error during load SNPMATRIX.txt in MATRIXEQTL by Michael Love 35k
This is not a Bioconductor package. You can try to find the maintainer by typing in R: `maintainer("MatrixEQTL")`
Answer: Swish with more than two conditions. Add support for contrasts? by Michael Love 35k
Thanks for posting -- good to clarify here. We have a few other designs/tests in `swish` but you are right that it's *mostly* focused aroun…
Votes
Answer: Swish with more than two conditions. Add support for contrasts?
Answer: ERROR: unable to find an inherited method for function ‘dispersions<-’ for signa
A: Sequence Distance matrix with large sequences
Sequence Distance matrix with large sequences
Scientist, Computational Biology at Denali Therapeutics in South San Francisco, CA, USA
Awards • All
Teacher to Peter Langfelder ★ 2.6k
Popular Question to James W. MacDonald 58k
Popular Question to Robert Castelo ★ 2.8k
Scholar to Hervé Pagès 15k
Prophet to DannyM • 0
Locations • All
Australia, 6 minutes ago
United States, 7 minutes ago
United States, 8 minutes ago
Republic of Ireland, 15 minutes ago
France, 49 minutes ago
Traffic: 277 users visited in the last hour
Content Search
Users
Tags
Badges
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6