Showing : MSA • reset
0
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0
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41
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msa module crash
msa
14 days ago systems • 0
0
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0
replies
76
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adding peptides to a multiple sequence alignment
msa IRanges Biostrings
28 days ago Mario Dejung • 0
0
votes
7
replies
1.5k
views
msa: object 'msaClustalW' of mode 'function' was not found
msa
updated 7 weeks ago by ▴ 290 • written 2.5 years ago by • 0
0
votes
1
reply
174
views
Error installing package msa on macOS Monterey 12.6 arm64
msa arm64
3 months ago lisa.a.ouellette • 0
0
votes
0
replies
240
views
Edit alignment in msa
alig msa Alignment
4 months ago Luis • 0
0
votes
1
reply
562
views
Difficulty with msaConvert function in R package
ape msa
updated 10 months ago by ▴ 290 • written 14 months ago by • 0
1
vote
1
reply
628
views
Msa package clustal-omega
msa
updated 13 months ago by ▴ 180 • written 14 months ago by • 0
0
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0
replies
236
views
Can I quantify the number of mismatches post alignment?
msa
15 months ago Field -Ye • 0
1
vote
6
replies
1.7k
views
MSA package fails to be installed - installation of package ‘msa’ had non-zero exit status
msa MultipleSequenceAlignment
updated 7 months ago by • 0 • written 23 months ago by • 0
8
votes
8
replies
1.7k
views
msa compilation failure - multiple definition of `GC_jmp_buf' in gc-7.2
software error msa
updated 15 months ago by ▴ 290 • written 2.6 years ago by ▴ 40
0
votes
1
reply
585
views
msaprettyprint
msa prettyprint
updated 20 months ago by ▴ 290 • written 21 months ago by • 0
1
vote
3
replies
1.5k
views
msaprettyprint error in R
msa
updated 2.2 years ago by ▴ 290 • written 2.5 years ago by • 0
0
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0
replies
253
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[Function Request]converts a AA-based fasta alignment (that includes aa fasta sequences of different strains) into a vcf file
msa
2.2 years ago yeli7068 • 0
0
votes
3
replies
882
views
DECIPHER save alignement in outputs
msa decipher output prettyPrint
updated 2.4 years ago by ▴ 290 • written 2.4 years ago by • 0
0
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0
replies
437
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msa: cannot load library silently
msa
2.4 years ago richel • 0
0
votes
3
replies
672
views
Align a list of DNA sequence, extract only positions with SNPs for conpact view?
msa Biostrings
updated 2.8 years ago by ▴ 290 • written 2.8 years ago by ▴ 80
1
vote
1
reply
551
views
Error using r msa::msaClustalW in parallel
software error msa
updated 3.0 years ago by ▴ 290 • written 3.0 years ago by ▴ 10
0
votes
1
reply
1.8k
views
Seeking help deploying Shiny application to RStudio Connect with Bioconductor package
Rstudio Connect msa bios2mds BiocManager Bioconductor
3.7 years ago morlenrp • 0
0
votes
1
reply
612
views
Can any of the existing `MSA` packages be used/adapted to visualize a pre-aligned fasta or tsv file (e.g., `kalign` output)?
msa phylogeny
updated 3.7 years ago by ▴ 20 • written 3.8 years ago by • 0
1
vote
2
replies
587
views
What is the '?' in the result of R package 'msa' function 'msa'?
MSA R Multiple sequence alignment consensus sequence
updated 3.8 years ago by ▴ 20 • written 3.8 years ago by • 0
0
votes
9
replies
1.2k
views
visualizing alignment without realignment
msa alignment visualization
updated 4.0 years ago by 25k • written 4.0 years ago by • 0
1
vote
2
replies
806
views
Package for custom visualization of multiple sequence alignment
MSA visualization
updated 4.3 years ago by ▴ 20 • written 4.3 years ago by • 0
0
votes
4
replies
778
views
Error: could not find function "msaConvert"
msa
updated 4.6 years ago by ▴ 290 • written 4.6 years ago by • 0
0
votes
1
reply
588
views
Defining populations in a msaClustalOmega alignment
msa
4.7 years ago cav3gh • 0
2
votes
2
replies
2.5k
views
How to get msa output in fasta format
msa msaprettyprint()
updated 4.8 years ago by ▴ 290 • written 4.8 years ago by • 0
2
votes
2
replies
709
views
seqfault wiht msa
msa segfault
4.8 years ago jmh5ad ▴ 40
0
votes
1
reply
952
views
Status 1 error when using msaPrettyPrint() to make pdfs with MsaAAMultipleAlignment
msaprettyprint() latex pdf msa
updated 5.1 years ago by ▴ 290 • written 5.1 years ago by • 0
0
votes
1
reply
904
views
Error in .Primitive("c")(<S4 object of class "IRanges">) : could not find symbol "recursive" in environment of the generic function running msa
msa iranges
updated 5.1 years ago by ▴ 290 • written 5.1 years ago by • 0
2
votes
11
replies
3.4k
views
How do I extract the complete MsaAAMultipleAlignment object to a file
msaprettyprint() msa multiplealignment export
updated 5.1 years ago by ▴ 290 • written 5.1 years ago by ★ 1.5k
2
votes
4
replies
1.3k
views
running msa (msa) aborts R session
msa alignment r software error
written 5.2 years ago by • 0
3
votes
2
replies
1.4k
views
Installation of MSA package fails
MSA package installation software error compilation error
updated 5.2 years ago by ▴ 290 • written 5.2 years ago by ▴ 10
2
votes
2
replies
1.5k
views
msa: How to obtain a subset of an alignment
msa Biostrings MultipleAlignment
updated 5.4 years ago by ▴ 290 • written 5.4 years ago by ▴ 10
4
votes
5
replies
1.3k
views
Can't install msa on FreeBSD
software error FreeBSD msa
5.5 years ago spcohen2 ▴ 20
1
vote
2
replies
862
views
untranslate AAstringset {Biostrings} or MsaAAMultipleAlignment {msa}
biostrings msa
5.5 years ago multipleseqs • 0
8
votes
14
replies
8.8k
views
Using msa msaPrettyPrint(): saving multiple alignement fasta file
msa msaprettyprint() fasta
updated 5.7 years ago by • 0 • written 6.0 years ago by ▴ 50
2
votes
5
replies
1.3k
views
Multiple Sequence Alignment using DNA sequence
msa decipher
5.7 years ago bbista91 ▴ 10
2
votes
2
replies
1.7k
views
Error with MSA package - could not find symbol "recursive"
msa
updated 5.9 years ago by 25k • written 5.9 years ago by ▴ 10
2
votes
1
reply
1.1k
views
Outputting a multiple alignment to file error: could not find function write.XStringSet
msa
updated 6.0 years ago by ▴ 290 • written 6.0 years ago by ▴ 10
1
vote
2
replies
935
views
msaPrettyPrint cannot handle long sequences?
msa msaprettyprint() multiple sequence alignment
6.0 years ago map2085 ▴ 40
9
votes
14
replies
2.5k
views
msa package installation problem
msa
updated 6.0 years ago by ▴ 10 • written 6.1 years ago by ▴ 120
2
votes
9
replies
2.4k
views
msa alignement: sorted sequences by sequence name
msa alignement output sorted
6.0 years ago Olorin ▴ 50
1
vote
1
reply
3.8k
views
Using msa msaPrettyPrint(): issues with latex
msa latex msaPrettyPrint()
6.0 years ago Olorin ▴ 50
0
votes
0
replies
943
views
Using readAAMultipleAlignment to parse CMFinder Stockholm format alignments
biostrings stockholm msa cmfinder
6.1 years ago Keith Hughitt ▴ 180
0
votes
1
reply
812
views
How to draw phylogeny tree for long genomes? ('msa' taking much time)
msa phylogenetic
updated 6.2 years ago by ▴ 290 • written 6.2 years ago by ▴ 50
0
votes
1
reply
1.4k
views
Error: could not find function "msaConvert"
msa software error
updated 6.3 years ago by ▴ 290 • written 6.3 years ago by • 0
0
votes
3
replies
1.1k
views
installation failed when trying msa
msa
updated 6.4 years ago by ▴ 290 • written 6.4 years ago by • 0
0
votes
1
reply
1.0k
views
msa memory limitation
msa
updated 6.6 years ago by ▴ 290 • written 6.7 years ago by ▴ 40
47 results • Page 1 of 1
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Comment: DESeq2 and heatmap for multiple comparisons by artem.vorobyev • 0
this I already did. My question is how to visualize differentially expressed genes on the heatmap for all 3 groups (healty->lesion->treat…
Comment: athPkgBuilder data source :missing probesets by nicklesteele532 • 0
> >>> > >>> How to handle the one probeset to multiple locus mappings? I can > >think 3 > >>> possible solutions: > >>> 1. pick the "best" …
Comment: How to use bootRanges to bootstrap small RNA loci (nullranges package) by Poonam • 0
> sum(width(gr_toexclude)) [1] 2713499861 I excluded everything which was not locus. If small rna locus is from 2000 to 4000 and next locu…
Comment: Why in Bioconductor community people rarely upvote questions? by Hervé Pagès 16k
BTW I fail to see how the lack of upvotes to a question would be discouraging as long as you get a good answer. OTOH I can see how failing …
Answer: DESeq2 and heatmap for multiple comparisons by swbarnes2 ★ 1.2k
If you want to know what genes are different between lesion and treated, compare them to each other.
Votes
Comment: recount 3 protect read length metadata
Answer: Doubts about manipulation and annotation of microarray files deposited at GEO
C: Batch correction in DESeq2
Comment: Strand information in a GAlignmentsList object derived from strand-specific pair
Comment: Strand information in a GAlignmentsList object derived from strand-specific pair
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