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MutationalPatterns
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1.8k
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Error in seqlevelsStyle after creating a BSgenome package
bsgenome
MutationalPatterns
4.1 years ago • updated 4.0 years ago
sibyl.bertrand
• 0
2
votes
2
replies
988
views
MutationalPatterns Signature Database Versions
MutationalPatterns
3.0 years ago • updated 2.9 years ago
Dario Strbenac
★ 1.5k
0
votes
0
replies
1.4k
views
Error in NMF estimation
MutationalPatterns
NMF
5.0 years ago
TRASA
• 0
0
votes
0
replies
662
views
Do you know a sofware to draw pedigrees + haplotypes?
SequencingData
STR
MutationalPatterns
pedigree
HapMap
2.8 years ago
Negar
• 0
0
votes
2
replies
602
views
could not find function "get_known_signatures"
MutationalPatterns
updated 17 months ago by
Vincent J. Carey, Jr.
6.7k • written 17 months ago by
anton.kratz
▴ 60
5 results • Page
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Comment: Differences in differential analysis methods for RNA-Seq
by
ATpoint
★ 4.1k
MAGeCK is a command line tool that is easy to use. I recommend you use it because a) the logFCs from DESeq2 and MAGeCK will be very similar…
Comment: Get genomic coordinates of CpGs sites (chromosomes, genomic position)
by
Yveto
• 0
Thank for your response. It is Illumina 450 K. I use this code ```{r } library(IlluminaHumanMethylation450kanno.ilmn12.hg19) annotat…
Answer: More regions in union when increasing DBA$config$mergeOverlap
by
Rory Stark
★ 5.2k
I think the documentation is out of sync with the code. Positive values represent gaps between intervals and negative values represent how …
Comment: log2FoldChange value is way too different when compared with counts(dds)
by
Michael Love
41k
But just to be clear, this is not the same as regressing out batch from the VST (approx log transformed): ``` limma::removeBatchEffect(cou…
Comment: log2FoldChange value is way too different when compared with counts(dds)
by
HAK
• 0
Thank you for the explanation, probably my brain just needed to accumulate enough info to understand what you are saying, but I finally got…
Votes
A: Error in DESeqDataSet : some values in assay are not integers
Bioconductor 3.19 is Released!
Bioconductor 3.19 is Released!
Answer: DEseq2 coefficient
SPIA plotP giving error
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