Bioconductor OSCA

Showing : OSCA • reset

votes

replies

436

views

BIOCON OSCA Bioconductor

4 months ago zr • 0

votes

replies

1.4k

views

Pseudotime testPseudotime TSCAN SingleCell OSCA

2.4 years ago Guandong Shang ▴ 40

votes

replies

2.2k

views

scater OSCA

2.6 years ago Guandong Shang ▴ 40

votes

947

views

SingleCell R OSCA

updated 2.8 years ago by jeroen.gilis ▴ 90 • written 2.8 years ago by BioInfoBeginnerrr • 0

votes

replies

3.0k

views

OSCA batchelor cell cycle regression

updated 4.4 years ago by Aaron Lun ★ 28k • written 4.5 years ago by ATpoint ★ 4.6k

5 results • Page 1 of 1

Recent ...

Replies

Comment: How to visualize these pathways using pathview by Guido Hooiveld ★ 4.1k

FYI: a similar, if not identical issue has been reported before (`pathview` has problems visualizing some pathways, but not all). You likel…

Comment: Why select top highly expressed genes based on normalized counts, but then plot by Quang NN ▴ 10

I see. Thank you ATpoint!

Comment: how should I apply "cpg.annotate" to TCGA methylation data in hg38 for HM450K? by Prakash Sah • 0

Thanks James!

Comment: Why select top highly expressed genes based on normalized counts, but then plot by ATpoint ★ 4.6k

I think I explained what the differences between approach 1 and 2 is in my answer. I assume that the tutorial uses vst because it is varian…

Comment: Why select top highly expressed genes based on normalized counts, but then plot by Quang NN ▴ 10

Thank you ATpoint for your responses. I am a bit confused because the difference between the two approaches is the selection of the genes…

Votes

Bioconductor Course, Kenya 2025: Applications Open!

Comment: can't install tscR

Answer: Csaw normalization strategies - general inquiry

A: DESeq2 interaction term

Comment: Recount3 data correspond to TCGA data

Awards • All