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OrganismDb
•
reset
1
vote
2
replies
3.9k
views
Error attaching org.Hs.eg.db package
annotationdbi
annotation
organismdb
loadnamespace
9.5 years ago
milorobertsmith
• 0
3
votes
13
replies
2.7k
views
Org.db: why a supposed unique key (ID) has multiple entries?
annotationhub
organismdb
orgdb
unsupported organisms
updated 8.3 years ago by
Valerie Obenchain
★ 6.8k • written 8.3 years ago by
Guido Hooiveld
★ 3.9k
2
votes
2
replies
2.6k
views
using the "promoters" function with an "OrganismDb" to generate "GRanges" with "REFSEQ" rather than UCSC gene names
promoter
granges
refseq
ucsc
organismdb
updated 8.5 years ago by
Robert Castelo
★ 3.3k • written 8.5 years ago by
efoss
▴ 10
4
votes
3
replies
2.5k
views
ggbio error: Objects of type OrganismDb not supported by autoplot
GO
OrganismDb
ggbio
GO
OrganismDb
ggbio
updated 9.4 years ago by
dalloliogm
▴ 50 • written 9.7 years ago by
Georg Otto
▴ 120
1
vote
2
replies
2.1k
views
AnnotationForge: org.Xx.eg.db created with makeOrgPackage() is missing org.Xx.egGO object.
organismdb
annotationdbi
annotationforge
updated 9.6 years ago by
Marc Carlson
★ 7.2k • written 9.6 years ago by
artur
▴ 80
0
votes
0
replies
2.1k
views
BioStrings for current R: RE: BSgenomeForge seed file - seqnames field
GO
Cancer
BSgenome
OrganismDb
SNPlocs
TranscriptDb
Biostrings
BSgenome
rtracklayer
MEDIPS
10.4 years ago
Hervé Pagès
16k
0
votes
0
replies
1.9k
views
Seed file error: RE: BioStrings for current R: RE: BSgenomeForge seed file - seqnames field
Annotation
GO
Cancer
BSgenome
OrganismDb
SNPlocs
TranscriptDb
Biostrings
BSgenome
GO
10.4 years ago
Hervé Pagès
16k
0
votes
1
reply
1.4k
views
Question about MEDIPS extend parameter : RE: Success: RE: Seed file error: RE: BioStrings for current R: RE: BSgenomeForge seed file - seqnames field
Annotation
GO
Cancer
BSgenome
OrganismDb
SNPlocs
TranscriptDb
Biostrings
BSgenome
MEDIPS
updated 10.4 years ago by
Matthias Lienhard
▴ 240 • written 10.4 years ago by
Hervé Pagès
16k
2
votes
2
replies
1.3k
views
How to remove IEA genes from list of GO terms?
go
annotation
organismdb
updated 9.6 years ago by
James W. MacDonald
65k • written 9.6 years ago by
Guido Hooiveld
★ 3.9k
1
vote
2
replies
1.2k
views
annotation: how to use "character" for function 'select()'
annotation
organismdb
updated 7.7 years ago by
Martin Morgan
25k • written 7.7 years ago by
Guido Hooiveld
★ 3.9k
3
votes
6
replies
990
views
Query regarding to create custom organism database with AnnotationForge package (AnnotationForge::makeOrgPackageFromNCBI)
AnnotationForge
OrganismData
OrganismDb
10 months ago
abhisek001
• 0
0
votes
3
replies
842
views
How can we use the organism database created by makeorgPackageFromNCBI to KEGG and GO analysis using clusterprofiler package.
clusterProfiler
OrganismDb
updated 5 months ago by
Guido Hooiveld
★ 3.9k • written 5 months ago by
Aastha Kapoor
• 0
12 results • Page
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Comment: Importing a GraphNEL into Cytoscape with RCy3 with error: "Error in cyrestPUT(pa
by
alex.pico
▴ 20
Hi Matthew. Happy to help. The error message you are getting is indeed not very helpful. It's just saying that the CyREST return obj "res" …
Comment: ChipQC 'names' attribute [9] must be the same length as the vector [2]'
by
bandconductor
• 0
thanks! you have saved me so much time
Comment: Problem finding certain variables when importing a public database GSE73103
by
Guido Hooiveld
★ 3.9k
FWIW: when I would like to make use of publicly available data, I always use the website to explore which metadata is submitted to GEO (and…
Comment: How to use bootRanges to bootstrap small RNA loci (nullranges package)
by
Michael Love
42k
This is `blockLength=200000`, and providing `seg=seg`? It's alright that it's not identical. In the bootstrapped data, you will now have l…
Comment: How to use bootRanges to bootstrap small RNA loci (nullranges package)
by
Poonam
• 0
Thank you, Michael. I used the script shared by you. The genomic distribution of the original and null loci looks like non-stationary. Plea…
Votes
Answer: ChipQC 'names' attribute [9] must be the same length as the vector [2]'
ChipQC 'names' attribute [9] must be the same length as the vector [2]'
A: DEXSeq time course design
using variable in design formula
differential expression for Single-cell RNAseq data using edgeR
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