Showing : PlotCounts • reset
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PlotCounts DESeq2 - how to plot count s for specific samples?
DESeq2 PlotCounts
2.7 years ago annamariabugaj ▴ 10
1
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4
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3.2k
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plotCounts to visualize variations of a specific genes along conditions
DESeq2 plotCounts vst
updated 3.0 years ago by 43k • written 3.0 years ago by ▴ 10
0
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2
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2.4k
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How to plot gene counts using plotCounts() with just an individual contrast?
DESeq2 plotCounts
updated 4.5 years ago by 43k • written 4.5 years ago by • 0
0
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1
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1.4k
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Deseq2 how to get input data for plotCounts for a single gene
deseq2 plotcounts
updated 5.5 years ago by 43k • written 5.5 years ago by • 0
0
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1
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1.9k
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plot statistic values in a DEseq2 plotCounts plot
deseq2 plotCounts pvalues RNAseq
updated 5.8 years ago by 43k • written 5.8 years ago by • 0
0
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3
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2.6k
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Change order of conditions when plotting: plotCounts {DESeq2}
R deseq2 plotcounts
6.5 years ago ecg1g15 ▴ 30
0
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5
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2.1k
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Error DESeq2 plotCounts invalid class DESeqDataSet object undefined class for slot rowRanges GenomicRangesORGRangesList
deseq2 plotCounts rowRanges
updated 7.2 years ago by 43k • written 7.2 years ago by ▴ 50
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Comment: Issues with downloading biomaRt - SeqInfo and S4 Vectors by James W. MacDonald 68k
Note that `S4Vectors` contains source code, so you will also need to [install RTools first][1]. [1]: https://cran.r-project.org/bin/win…
Answer: Issues with downloading biomaRt - SeqInfo and S4 Vectors by shepherl 4.2k
Our windows binaries are currently lagging behind as we are currently do not have a windows builder. If you are on windows you can try ins…
Comment: Issues with downloading biomaRt - SeqInfo and S4 Vectors by shepherl 4.2k
Can you please provide your `sessionInfo()` after doing `library("S4Vectors")`
Comment: VariantAnnotation does escape = within header string quotes by Daniel Cameron ▴ 40
I'm just stripping the entire line as a workaround using `meta(header(vcf))$DRAGENCommandLine = NULL`. Not ideal but at least subsequent pa…
Comment: Setting up a DESeq2 Design with Paired Data by Alexander • 0
Hi Kevin, Firstly, thank you so much for not only a very prompt response, but one that is incredibly insightful and helps me learn DESeq2 …
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Answer: DESeq2 design for haplotype MPRA
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Answer: Failure to download resources (MeSHDb) from AnnotationHub
Answer: Suppress warning in RHDF5 write
Answer: Suppress warning in RHDF5 write
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