Bioconductor PlotCounts

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DESeq2 PlotCounts

2.2 years ago annamariabugaj ▴ 10

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DESeq2 plotCounts vst

updated 2.5 years ago by Michael Love 43k • written 2.5 years ago by Laia ▴ 10

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2.2k

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DESeq2 plotCounts

updated 4.0 years ago by Michael Love 43k • written 4.0 years ago by elizabethe819 • 0

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1.3k

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deseq2 plotcounts

updated 5.0 years ago by Michael Love 43k • written 5.0 years ago by sunthomas • 0

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1.7k

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deseq2 plotCounts pvalues RNAseq

updated 5.3 years ago by Michael Love 43k • written 5.3 years ago by anne.hoffrichter • 0

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R deseq2 plotcounts

6.0 years ago • updated 5.9 years ago ecg1g15 ▴ 30

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deseq2 plotCounts rowRanges

updated 6.7 years ago by Michael Love 43k • written 6.7 years ago by I.Castanho ▴ 50

7 results • Page 1 of 1

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Comment: DeSeq Strategies for run to run Replication by Michael Love 43k

You shouldn't need to run `DESeq` on the test data, or manually compute normalization factors. ``` dds_test <- ... # create object dds_te…

Answer: Feature Counts - potential bug with outfile.jcounts by Wei Shi ★ 3.6k

We have made significant changes to how featureCounts annotates junctions detected in read mapping results. These updates are included in t…

Comment: How to perform batch correction on scRNA-seq with confounding plate effects? by 瑞宏 • 0

I would like to share my own understanding: in single-cell RNA sequencing (scRNA-seq), batch correction is solely intended to identify the …

Comment: DiffBind can't find a DAR by Mengjun • 0

Additionally, i checked my bigwig in igv, it shows that the ctrl_1 is more like ko_1, and ctrl_2's track is more like ko_2's track. Did an…

Comment: European Bioconductor Conference 2023 planning by ht • 0

Great news about the European Bioconductor Conference 2023 planning! As someone who enjoys statistical computing and bioinformatics, I'm ex…

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Answer: Feature Counts - potential bug with outfile.jcounts

Bioconductor 3.21 is Released!

Comment: GSVA ssGSEA vs. Broad implementation of ssGSEA

Answer: GSVA ssGSEA vs. Broad implementation of ssGSEA

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