Bioconductor PolyPhen

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574

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pd.rabgene.1.0.st PolyPhen

updated 2.9 years ago by ATpoint ★ 4.5k • written 2.9 years ago by cyb.95521 • 0

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2.4k

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Transcription HapMap PolyPhen SIFT convert genomes ensemblVEP Transcription HapMap SIFT

updated 10.8 years ago by Valerie Obenchain ★ 6.8k • written 10.9 years ago by Thomas Sandmann ▴ 30

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1.4k

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VariantAnnotation Annotation PolyPhen SIFT annotate VariantAnnotation ensemblVEP Annotation

11.0 years ago Valerie Obenchain ★ 6.8k

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1.5k

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Annotation PolyPhen SIFT Annotation PolyPhen SIFT

updated 11.2 years ago by Valerie Obenchain ★ 6.8k • written 11.2 years ago by Robert Castelo ★ 3.4k

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1.2k

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PolyPhen PolyPhen

11.4 years ago Thomas Maurel ▴ 800

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1.6k

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zebrafish PolyPhen SIFT affy genomes zebrafish PolyPhen SIFT affy genomes

11.6 years ago Thomas Maurel ▴ 800

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1.6k

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miRNA GO Caenorhabditis elegans Sus scrofa zebrafish PolyPhen SIFT miRNA GO Sus scrofa

12.5 years ago Thomas Maurel ▴ 800

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Comment: [How to construct a model.matrix ] by kyj2226 • 0

Thanks to you, I learn a lot. Many thanks, Yujin.

Comment: How to extract phastcons score for all protein coding genes and lncRNAs using Ge by rania.alanany • 0

thank you for your advice, I posted separate post.

Comment: How to extract phastcons score for all protein coding genes and lncRNAs using Ge by Robert Castelo ★ 3.4k

Hi, this is a long comment thread on 4-year old post, please open a new post with you question. To increase the odds of getting useful answ…

Answer: DESeq2 rerun returns different results by ATpoint ★ 4.5k

DESeq2 is deterministic if you use same input, code and software versions. Make sure to version-control your environment by at least tracki…

Answer: [How to construct a model.matrix ] by Gordon Smyth 51k

> Initially, I simply used > `lm(Epigenetic_age ~ Age_group + Age + Sex + PC1 + PC2 + PC3 + PC4 + PC5 + B + CD4T + CD8T + Mono + NK + Neutr…

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Answer: [How to construct a model.matrix ]

C: DESeq2 baseMean values for each sample

Comment: ColData and ERROR: rows did not converge in beta, labelled in mcols(object)$beta

A: Some questions for remove batch effect by using mnnCorrect

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