Bioconductor PolyPhen

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736

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pd.rabgene.1.0.st PolyPhen

updated 4.1 years ago by ATpoint ★ 5.0k • written 4.1 years ago by cyb.95521 • 0

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3.2k

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Transcription HapMap PolyPhen SIFT convert genomes ensemblVEP Transcription HapMap SIFT

updated 12.1 years ago by Valerie Obenchain ★ 6.8k • written 12.1 years ago by Thomas Sandmann ▴ 30

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1.6k

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VariantAnnotation Annotation PolyPhen SIFT annotate VariantAnnotation ensemblVEP Annotation

12.2 years ago Valerie Obenchain ★ 6.8k

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1.9k

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Annotation PolyPhen SIFT Annotation PolyPhen SIFT

updated 12.4 years ago by Valerie Obenchain ★ 6.8k • written 12.4 years ago by Robert Castelo ★ 3.4k

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1.4k

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PolyPhen PolyPhen

12.6 years ago Thomas Maurel ▴ 800

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1.9k

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zebrafish PolyPhen SIFT affy genomes zebrafish PolyPhen SIFT affy genomes

12.8 years ago Thomas Maurel ▴ 800

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1.9k

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miRNA GO Caenorhabditis elegans Sus scrofa zebrafish PolyPhen SIFT miRNA GO Sus scrofa

13.7 years ago Thomas Maurel ▴ 800

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Comment: soGGi error by shepherl 4.3k

We have tried to contact the soGGi maintainer to have them update the package to the newer version of gglot2 but they have so far been unre…

Comment: using limma trend workflow in CAMERA by Gordon Smyth 53k

No, `trend.var=TRUE` and `trend=TRUE` are not needed in any voom pipeline, because the trend is already incorporated into the voom weights.

Comment: Questions about bacon QC and correction on EWAS results by Tikaaa2sahaaaq2c • 0

In the world of mobile games, the 88ef game download has gained traction for its performance driven design [free download][1], similar to …

Comment: using limma trend workflow in CAMERA by A.Barden ▴ 20

Do you need to set trend.var=TRUE when using camera in the limma-voom pipeline with RNA-Seq data (as apposed to limma-trend pipeline)?

Comment: Upcoming Ensembl API and data access changes - new blog post available by Tikaaa2sahaaaq2c • 0

Just as the Ensembl team transitions to a new platform for streamlined data access, diners can benefit from a digital newks menu prices con…

Votes

Answer: DiffBind differential analysis

Answer: Limma-voom sample weights and impact on DEG numbers

C: Why limma, edgeR, and DESeq did not implement fold change moderation first?

Comment: using limma trend workflow in CAMERA

C: z-score with DESeq2?

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