Biostar PolyPhen

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Transcription HapMap PolyPhen SIFT convert genomes ensemblVEP Transcription HapMap SIFT

updated 8.4 years ago by Valerie Obenchain ★ 6.7k • written 8.4 years ago by Thomas Sandmann ▴ 30

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miRNA GO Caenorhabditis elegans Sus scrofa zebrafish PolyPhen SIFT miRNA GO Sus scrofa

10.0 years ago Thomas Maurel ▴ 790

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zebrafish PolyPhen SIFT affy genomes zebrafish PolyPhen SIFT affy genomes

9.1 years ago Thomas Maurel ▴ 790

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Annotation PolyPhen SIFT Annotation PolyPhen SIFT

updated 8.7 years ago by Valerie Obenchain ★ 6.7k • written 8.7 years ago by Robert Castelo ★ 2.9k

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VariantAnnotation Annotation PolyPhen SIFT annotate VariantAnnotation ensemblVEP Annotation

8.5 years ago Valerie Obenchain ★ 6.7k

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PolyPhen PolyPhen

8.9 years ago Thomas Maurel ▴ 790

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114

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pd.rabgene.1.0.st PolyPhen

updated 4 months ago by ATpoint ★ 1.2k • written 4 months ago by cyb.95521 • 0

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Comment: Italicise by Pau • 0

They're the same: example of the vignette: "italic('VCAM1')" and result from my data: "italic('CARS1')" As I am running against time be…

Comment: Can Differential Isoform expression analysis can be performed using DESeq2 packa by priyanka.m • 0

Thank you for the suggestions. I will try to compare my results and accordingly interpret the two.

Answer: [sva] Error in density.default(x, adjust = adj) : 'x' contains missing values by wahaha • 0

I found the reason, because some gene expression levels are 0 in all samples. you can add these code to check the data: >exp_mean <- appl…

Answer: DESeq2 how to specify contrast to test difference of differences by Nicole • 0

The comment from @mikelove about specifying numeric contrasts answered my question. This code is not standalone, but I will leave it here i…

Comment: DESeq2 how to specify contrast to test difference of differences by Nicole • 0

Thank you, @mikelove - that did it! The results make sense now. From my original post, could you clarify what the `group1w.sexfemale` contr…

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Answer: DESeq2 how to specify contrast to test difference of differences

Comment: DESeq2 how to specify contrast to test difference of differences

Answer: Confused about the design matrix in edgeR: How to tell R to consider one level a

Answer: biomaRt error unable to fix: need help troubleshooting

Answer: edgeR : results from goana and kegga functions show opposite sig. p-value

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Scholar to Nicole • 0

Teacher to Michael Love 37k