Showing : Proteome • reset
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193
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analysis of overexpressed proteins in metaproteomes
Proteomics ProteoMM ProteomicsWorkflow Proteome
written 4 months ago by ▴ 10
2
votes
6
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762
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Biostrings error at retrieving protein sequences
SequenceMatching Biostrings DifferentialExpression Proteome
updated 6 months ago by 16k • written 6 months ago by • 0
0
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1
reply
475
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catagorization of proteins
Proteome ProtGenerics
written 19 months ago by • 0
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0
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558
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Outliers
Proteomics Proteome
updated 19 months ago by ★ 4.0k • written 19 months ago by • 0
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0
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743
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ProteoMM analysis with two replicates
shotgunproteomics Proteome proteomics Proteomics ProteoMM
2.1 years ago ary.lech ▴ 10
1
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7
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3.1k
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How can I convert the "Majority protein IDs" to "Gene names" (example below shown)?
MassSpectrometryData Proteome Database DEP
3.1 years ago tpm • 0
1
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0
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1.5k
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News: Online training - Proteomics in R and Bioconductor
ProteomicsWorkflow proteomics Proteome
3.4 years ago info ▴ 10
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1
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1.0k
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R package to change protein *.msf file to any readable file
Proteome ProteomicsWorkflow proteomics
updated 3.4 years ago by ★ 1.3k • written 3.4 years ago by ▴ 20
0
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5
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2.4k
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mRNA-seq cross-species analysis, is it possible?
Genetics Normalization Proteome DESeq Genetics Normalization Proteome DESeq
updated 12.7 years ago by ▴ 20 • written 12.7 years ago by ▴ 370
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804
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BSgenome data package of the human proteome: Does it exist?
Proteome Proteome
14.5 years ago Tillinghast, Guy, M.D. ▴ 30
0
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2
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1.6k
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I: Two way anova or manova?
Proteome Proteome
updated 16.7 years ago by ▴ 90 • written 16.7 years ago by ▴ 20
11 results • Page 1 of 1
Recent ...
Replies
Answer: Dominance Index for Shotgun Metagenomics Data by Leo Lahti ▴ 40
1. Note that Simpson's dominance index (\lambda) is a different index than inverse Simpson (1/\lambda) or reciprocal Simpson (1-\lambda). T…
Comment: Math expression in shapeCustom legend in EnhancedVolcano by pl23 • 0
Thank you very much - that worked perfectly! Word of warning to those who try this: it screws up the other legends because of the markdown …
Answer: PCA plot suggestions by Michael Love 41k
For help with interpretation and design of analysis, I recommend working with a local statistician. Due to time restrictions, I can only…
Comment: DESeq2 Error in `.rowNamesDF<-`(x, value = value): Invalid 'row.names' length by ussarizona ▴ 10
Hi Michael, Yes, I could figure it out what does the error mean. In my matrix I had the first colum GeneID while in my condition I only h…
Answer: Deseq2. decontXcounts not integers. Useful alternative? by Michael Love 41k
Another option would be to put the per sample estimated contamination in the design. This is for example how RUV etc help remove spurious D…
Votes
Answer: Dominance Index for Shotgun Metagenomics Data
Answer: Math expression in shapeCustom legend in EnhancedVolcano
Comment: DESeq2 Error in `.rowNamesDF<-`(x, value = value): Invalid 'row.names' length
Comment: Deseq2. decontXcounts not integers. Useful alternative?
Comment: Opposite sign of LFC in count plots of DEGs (DESeq2)
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