Bioconductor ProteomicsWorkflow

Showing : ProteomicsWorkflow • reset

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725

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RforProteomics Proteomics ProteomicsWorkflow

updated 8 months ago by Laurent Gatto 1.6k • written 9 months ago by mmvar • 0

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6.1k

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limma ProteomicsWorkflow

updated 7 months ago by Gordon Smyth 50k • written 2.5 years ago by David Lyon ▴ 340

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924

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limma Proteomics ProteomicsWorkflow

updated 20 months ago by Gordon Smyth 50k • written 20 months ago by samantha.v.goncalves • 0

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765

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Proteomics ProteoMM ProteomicsWorkflow

updated 9 months ago by mmvar • 0 • written 11 months ago by nkvnambiar • 0

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msqrob2 ProteomicsWorkflow proteomics

updated 22 months ago by Gordon Smyth 50k • written 24 months ago by Jane ▴ 10

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Proteomics RforProteomics ProteomicsWorkflow Spectra MassSpectrometryData

updated 9 months ago by Laurent Gatto 1.6k • written 9 months ago by mmvar • 0

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Proteomics ProteomicsWorkflow UniProt.ws

updated 3.2 years ago by James W. MacDonald 65k • written 3.2 years ago by Dario Strbenac ★ 1.5k

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191

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Proteomics ProteoMM ProteomicsWorkflow Proteome

written 4 months ago by ary.lech ▴ 10

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740

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proteinProfiles ProteomicsWorkflow ProteomicsAnnotationHubData Proteomics

updated 2.7 years ago by Gordon Smyth 50k • written 2.7 years ago by ALOK • 0

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ProteomicsWorkflow proteomics proteinProfiles

updated 14 months ago by Laurent Gatto 1.6k • written 3.4 years ago by yueli7 ▴ 20

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Proteome ProteomicsWorkflow proteomics

updated 3.4 years ago by swbarnes2 ★ 1.3k • written 3.4 years ago by yueli7 ▴ 20

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ProteomicsWorkflow proteomics Proteome

3.4 years ago info ▴ 10

12 results • Page 1 of 1

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Answer: Deseq2. decontXcounts not integers. Useful alternative? by Michael Love 41k

Another option would be to put the per sample estimated contamination in the design. This is for example how RUV etc help remove spurious D…

Answer: ATACseq merge peaks by ATpoint ★ 4.0k

That depends on your analysis. Typically, for differential analysis (and convenience) you would produce a single set of peaks (e.g. by merg…

Comment: Deseq2. decontXcounts not integers. Useful alternative? by camp ▴ 10

Yes, @atpoint is correct. decontX decontaminated counts are not integers due to the way the variation inference algorithm works, but you ca…

Comment: Deseq2. decontXcounts not integers. Useful alternative? by ATpoint ★ 4.0k

I do not know this decontamination tool you use but generally: If these counts are basically "corrected" raw counts in the sense that they'…

Answer: Improving the design matrices vignette in RNAseq123 by Gordon Smyth 50k

Thanks to Shian Su, we have confirmed that the problem in the design matrices vignette html is caused by a bug in knitr 1.44 (to do with sp…

Votes

Comment: Deseq2. decontXcounts not integers. Useful alternative?

Comment: Opposite sign of LFC in count plots of DEGs (DESeq2)

biomaRt error: database disk image is malformed

Comment: biomaRt : No lock file for BiocFileCache

Answer: Cross-species analysis - how to compute the mid parent value?

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Popular Question to James W. MacDonald 65k

Scholar to Michael Love 41k

Supporter to JKim • 0