Bioconductor QuasR Error

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QuasR qQCReport QuasR error Error in .normarg_totalsize(totalsize)

5.0 years ago A.Singh • 0

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quasR quasr error alignmentparameters quasr

6.1 years ago Amer Ghalawinji • 0

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quasr quasr error

7.9 years ago jlncrnt ▴ 10

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quasr quasr error paired-end reads rnaseq

8.0 years ago guillaume.dachy • 0

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1.5k

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quasr error

updated 8.8 years ago by Hotz, Hans-Rudolf ▴ 400 • written 8.9 years ago by ezgi_can00 • 0

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quasr error

8.9 years ago Paul Ríos • 0

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quasr error

updated 8.9 years ago by Martin Morgan 25k • written 8.9 years ago by maedakus ▴ 10

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2.6k

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quasr error

updated 9.0 years ago by Hotz, Hans-Rudolf ▴ 400 • written 9.0 years ago by tarek.mohamed ▴ 10

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QuasR Error

9.0 years ago tarek.mohamed ▴ 10

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Comment: minfi latest update for EPIC V2 chip by macdonaldfrench7286566 • 0

Yes, the most updated analysis for the EPIC V2 chip using the minfi package still involves using the annotations provided by jokergoo. *Th…

Answer: Incorporating Salmon offset matrix into Wilcoxon DEG analysis by Gordon Smyth 52k

To compute CPM values from edgeR: ``` y <- DGEList(counts = counts, samples = samples, genes = genes, group = samples$Disease_status) y <- …

Comment: edgeR + tximport: calcNormFactors and the usage of offsets by Gordon Smyth 52k

Follow the vignette. It explains how to call edgeR's cpm function to use the offsets.

Comment: edgeR + tximport: calcNormFactors and the usage of offsets by Andre • 0

But if i want to do another type of analysis like Wilcoxon/Mann-Whitney and want to incorporate salmon offset can i simply use the cpm func…

Comment: DESeq error: counts matrix should be numeric, currently it has mode: character by Kucsera • 0

After applying your suggestion, the following error pops up: ``` Error in mde(x) : 'list' object cannot be coerced to type 'double' ```

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A: RNA-seq Normalisation - normalise all samples in experiment or only the ones use

Answer: Can DESeq2's design compensate for sequencing experimental design shortcomings?

Comment: Issues with seqlevelsStyle when making custom txdb objects for genomes/annotatio

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