Bioconductor RStudio

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Ensembl Rstudio ensembldb AnnotationHub ensdb

updated 7 weeks ago by shepherl 3.9k • written 2.3 years ago by jon.klonowski ▴ 40

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error RStudio ggplot2 DESeq2

updated 6 months ago by James W. MacDonald 65k • written 6 months ago by BioES • 0

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scRNAseq RStudio DESeq2

updated 9 months ago by ATpoint ★ 4.1k • written 9 months ago by DrFizz • 0

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800

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RStudio convert ensembldb NCBI

6 months ago • updated 5 months ago j_denton • 0

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503

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Rstudio cDNA ensembldb NCBI

5 months ago R_Page • 0

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465

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AccNo OrgDb convert Organismname RStudio

updated 5 months ago by James W. MacDonald 65k • written 5 months ago by j_denton • 0

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388

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Rstudio scRNAseq DESeq2

updated 8 months ago by ATpoint ★ 4.1k • written 8 months ago by DrFizz • 0

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368

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Rstudio plotPCA DESeq2

5 months ago yee • 0

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342

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DESeq2 RSTUDIO PCAtools

updated 10 days ago by swbarnes2 ★ 1.3k • written 12 days ago by Aaliya • 0

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237

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RStudio ggkegg

updated 4 months ago by James W. MacDonald 65k • written 4 months ago by Ramirj49 • 0

10 results • Page 1 of 1

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Comment: Why does GSEA on edgeR results for randomized samples give highly significant p- by Chris • 0

Thanks Gordon for the advice! I ran fgsea, gsva and camera(), the most significant pathways are different. For the purpose of finding pathw…

Comment: How to use bootRanges to bootstrap small RNA loci (nullranges package) by Michael Love 41k

Check the number of bootstrapped data per chromosome compared to the original, and then you can also look at its distribution. For this it'…

Comment: DNAString: Standard checksum function? by Henrik Bengtsson ★ 2.4k

For completeness: SEGUID v2 (https://www.seguid.org/), implemented in CRAN package **[seguid](https://cran.r-project.org/package=seguid)*…

Comment: fgsea significant result by Chris • 0

Thanks ATpoint! Setting a fixed seed can reproduce the same result. However, if someone else analyze the same data with different seed, the…

Comment: SGSeq: moving toward diffex from SGSeq analysis by Sara • 0

Thank you for your response. I have another question about saving the sgvc result as a CSV file. I would appreciate your help, please. ``` …

Votes

Answer: Why does GSEA on edgeR results for randomized samples give highly significant p-

Handling multiple differential expression comparisons

Answer: fgsea significant result

package goseq seems to be not available on the latest version of R

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