Showing : convert • reset
0
votes
2
replies
465
views
NCBI protein conversion to CDNA and NCBI gene (in R)
convert
updated 7 months ago by 66k • written 7 months ago by • 0
1
vote
3
replies
563
views
Pan-organism OrgDb database, Accession number translated to organism name in R
AccNo OrgDb convert Organismname RStudio
updated 8 months ago by 66k • written 8 months ago by • 0
2
votes
5
replies
1.1k
views
Conversion between different types of bioinformatic forms. (eg. NCBI protein to Ensembl protein) in R
RStudio convert ensembldb NCBI
8 months ago j_denton • 0
2
votes
1
reply
864
views
Using oligo or xps to read and convert RNA-seq data CEL file to txt file.
oligoData DataImport oligo RNASeqData convert
updated 12 months ago by 66k • written 12 months ago by • 0
0
votes
2
replies
1.3k
views
suggestions/comments on DESeq transcript wise analysis
convert DESeq convert DESeq
written 12.5 years ago by ▴ 190
1
vote
2
replies
6.6k
views
How to convert Illumina HT_12_v4 annotation
convert R annotation microarray illumina human ht-12 v4
updated 19 months ago by ▴ 20 • written 6.6 years ago by • 0
0
votes
0
replies
678
views
TFutils database
TFutils mouse gene convert
3.2 years ago nicocillari • 0
2
votes
6
replies
1.7k
views
getLDS error in scan
biomaRt getLDS convert gene symbols
updated 3.8 years ago by ★ 6.5k • written 3.8 years ago by • 0
1
vote
4
replies
1.5k
views
RNA-seq analysis using R
limma rnaseq convert R
updated 15 months ago by 51k • written 5.7 years ago by ▴ 10
0
votes
3
replies
3.6k
views
convert affy CEL files to data.frame??
convert convert
updated 5.9 years ago by • 0 • written 13.5 years ago by ▴ 40
1
vote
7
replies
2.4k
views
Can XCMS output continuum/profile data to netCDF format?
xcms convert protein
updated 7.6 years ago by ★ 2.1k • written 7.6 years ago by • 0
1
vote
3
replies
1.5k
views
To convert MAList to ExpressionSet using R package 'convert'
convert
updated 7.7 years ago by 51k • written 7.7 years ago by • 0
0
votes
5
replies
6.2k
views
How to reverse translate amino acid sequence into mammalian codon optimised cDNA
convert translation
written 9.7 years ago by ▴ 20
1
vote
1
reply
1.5k
views
converting amino-acid one letter code into cDNA sequene
convert aminoacid-onlettercode cDNA
8.1 years ago arvind90.psc • 0
1
vote
2
replies
2.6k
views
making ExpressionSet from RGList via NChannelSet for use with 'sva'
biobase convert sva ringo arrayqualitymetrics
updated 8.4 years ago by 51k • written 8.4 years ago by • 0
1
vote
2
replies
3.5k
views
minfi, bumphunter + complex experimental design, and 3 other 450K queries
GO convert minfi bumphunter GO convert minfi bumphunter
updated 8.5 years ago by ▴ 30 • written 10.2 years ago by ★ 4.0k
1
vote
1
reply
1.7k
views
Error of GDS2eSet() function
convert geoquery error GDS2eSet
updated 8.6 years ago by 66k • written 8.6 years ago by • 0
0
votes
3
replies
2.0k
views
Minfi "mapToGenome" error when attempting to generate a genomicRatioSet
Cancer convert minfi Cancer convert minfi
updated 8.7 years ago by • 0 • written 10.4 years ago by ★ 6.5k
0
votes
0
replies
1.1k
views
How to convert codominant Microsatellite two column data into illumina AB format?
Microsatellite Convert recode
8.8 years ago parka • 0
0
votes
3
replies
12k
views
How to combine expression values of multiple probes for one gene
probe convert geneexpression onechannelgui
updated 9.0 years ago by ▴ 830 • written 9.0 years ago by ▴ 10
6
votes
1
reply
3.1k
views
[ReportingTools] HTMLReport of DESeq2 results using Ensembl Gene Ids
Sequencing Annotation convert biomaRt ReportingTools DESeq2 Sequencing Annotation convert
updated 9.6 years ago by ▴ 370 • written 10.6 years ago by ▴ 160
5
votes
5
replies
2.1k
views
Metagenomic analysis: Aligning ChIPseq data on TSS
metagenomics chipseq biomart shortread convert biomaRt
9.9 years ago patrick.schordert ▴ 30
0
votes
1
reply
2.1k
views
Converting .gpr files to .csv files
Microarray GO convert
updated 9.9 years ago by 66k • written 9.9 years ago by ★ 13k
0
votes
5
replies
2.6k
views
Motif enrichment analysis: Error in transfac format and background frequencies from BSGenome
BSgenome convert BSgenome PWMEnrich MotifDb
updated 9.9 years ago by ▴ 80 • written 9.9 years ago by ▴ 50
0
votes
0
replies
1.5k
views
ChIPpeakAnno
SNP Annotation annotate convert SNP Annotation annotate convert
9.9 years ago Julie Zhu ★ 4.3k
0
votes
1
reply
2.1k
views
narrow and xstringset
convert convert
updated 10.0 years ago by ★ 6.8k • written 10.0 years ago by ▴ 680
0
votes
2
replies
3.0k
views
Biomart annotation
annotate convert annotate convert
updated 10.0 years ago by ▴ 190 • written 10.0 years ago by ▴ 40
0
votes
2
replies
1.9k
views
ShortReadQ and conversion of quality scores to characters
convert convert
updated 10.0 years ago by 25k • written 10.0 years ago by ▴ 310
0
votes
1
reply
1.8k
views
SomaticSignatures
Annotation Cancer convert Annotation Cancer convert
updated 10.1 years ago by ★ 1.3k • written 10.1 years ago by ▴ 90
0
votes
6
replies
3.4k
views
converting probeset id to gene id's : fRMA
probe affy convert frma probe affy convert frma
updated 10.1 years ago by ★ 3.0k • written 10.1 years ago by ▴ 190
0
votes
7
replies
1.7k
views
Approaches to building Rle sequences from ranges
GO convert GO convert
updated 10.1 years ago by ▴ 90 • written 10.1 years ago by ▴ 40
0
votes
2
replies
2.3k
views
GRanges - coercion from dataframe
convert convert
updated 10.2 years ago by ★ 11k • written 10.2 years ago by ▴ 10
0
votes
4
replies
1.5k
views
GenomicAlignments and QNAME collision
RNASeq Cancer convert Rsamtools GenomicAlignments RNASeq Cancer convert Rsamtools
updated 10.2 years ago by ▴ 90 • written 10.2 years ago by ★ 6.8k
0
votes
4
replies
1.5k
views
error on loading ratioConvert() in minfi
convert minfi convert minfi
updated 10.2 years ago by ★ 6.5k • written 10.2 years ago by ★ 13k
1
vote
2
replies
12k
views
Mapping gene symbols to gene names (org.Hs.eg.db?)
convert convert
updated 10.2 years ago by 66k • written 10.2 years ago by ★ 1.1k
0
votes
0
replies
1.2k
views
viewApply drops feature names; transfer names between lists
Coverage convert Coverage convert
10.2 years ago Chris Seidel ▴ 80
0
votes
0
replies
2.2k
views
Pathview question
Network convert pathview Network convert pathview
10.3 years ago Luo Weijun ★ 1.6k
0
votes
9
replies
2.6k
views
ReportingTools gene IDs
convert convert
updated 10.3 years ago by 66k • written 10.3 years ago by ★ 1.5k
0
votes
5
replies
2.7k
views
summarizeOverlaps using GRanges or bed file as reads?
convert convert
updated 10.3 years ago by 25k • written 10.3 years ago by ★ 7.9k
0
votes
0
replies
994
views
BiomaRt getBM error: Unknown column
convert biomaRt convert biomaRt
10.3 years ago Guest User ★ 13k
0
votes
5
replies
1.8k
views
A question about the function readGAlignmentPairs in GenomicRnages package
Alignment Cancer convert GenomicAlignments Alignment Cancer convert GenomicAlignments
updated 10.3 years ago by 16k • written 10.3 years ago by ▴ 50
0
votes
0
replies
1.5k
views
CellMix package use with own data matrix
convert convert
10.3 years ago Riba Michela ▴ 90
0
votes
0
replies
1.4k
views
crlmm problem
SNP convert beadarray crlmm SNP convert beadarray crlmm
10.3 years ago Matthias Arnold ▴ 10
0
votes
0
replies
1.7k
views
DMR identification: minfi speed, memory problems
Annotation convert minfi methyAnalysis bumphunter Annotation convert minfi methyAnalysis
10.4 years ago Allegra Petti ▴ 120
0
votes
8
replies
2.4k
views
methyAnalysis for DMR identification
convert methyAnalysis convert methyAnalysis
updated 10.4 years ago by ▴ 160 • written 10.4 years ago by ★ 13k
0
votes
6
replies
3.1k
views
DMR identification: minfi speed, memory problems
Annotation convert minfi methyAnalysis bumphunter Annotation convert minfi methyAnalysis
updated 10.4 years ago by 66k • written 10.4 years ago by ★ 13k
0
votes
2
replies
1.4k
views
Tigre Package question 3
Microarray impute PROcess convert mmgmos puma tigre trigger Microarray impute PROcess
updated 10.5 years ago by ▴ 60 • written 10.5 years ago by ▴ 50
0
votes
2
replies
1.8k
views
Minfi "mapToGenome" error when attempting to generate a genomicRatioSet
convert minfi convert minfi
updated 10.5 years ago by ★ 6.5k • written 10.5 years ago by ▴ 30
0
votes
1
reply
1.5k
views
Using GOstats with ScanArray Express Data
Organism probe convert GOstats Organism probe convert GOstats
updated 10.5 years ago by ★ 13k • written 10.5 years ago by ★ 13k
0
votes
3
replies
2.2k
views
ChIPpeakAnno: TSS at - strand
Annotation convert ChIPpeakAnno Annotation convert ChIPpeakAnno
10.5 years ago Julie Zhu ★ 4.3k
50 results • Page 1 of 1
Recent ...
Replies
Comment: 'path' must be string by James W. MacDonald 66k
Yes. We already knew that from the error message, and I told you that in my previous email. The point wasn't to figure out *where* the err…
Comment: 'path' must be string by cpierce2 • 0
I ran the debugger and this is the line that causes the error: ``` if (any(startsWith(pkcData[["RTS_ID"]][1L], "RTS")) & any(startsWith(pr…
Comment: Generating surrogate variables across multiple variables of interest by Robert • 0
Yes, we have several biomarkers, and a proteomic set, so we are characterizing each biomarker by it's proteomic association(s). The use for…
Comment: Error running tximeta by Guido Hooiveld ★ 4.0k
FYI (since I just finalized a run with `salmon`). For each sample (`.`) an output folder is created that contains 3 files (`cmd_info.json`…
Comment: Error running tximeta by Michael Love 42k
Tximeta uses the full directory. There are files that give the key information about the transcriptome. It's not a good idea to selectively…
Votes
Question: Deconvolution Methods on RNA-Seq Data (Mixed cell types)
Answer: Understanding how to contrast two treatments in DESeq2
Answer: Understanding how to contrast two treatments in DESeq2
Cannot extract TxFeatures for a defined GRanges object
Limma time series spline help
Awards • All
Popular Question to Lluís Revilla Sancho ▴ 730
Popular Question to maltethodberg ▴ 180
Scholar to Michael Love 42k
Popular Question to Leonardo Collado Torres ★ 1.1k
Scholar to Gordon Smyth 51k
Locations • All
Hong Kong, 17 minutes ago
France, 26 minutes ago
WEHI, Melbourne, Australia, 59 minutes ago
Ann Arbor, 3 hours ago
San Diego, 3 hours ago
Traffic: 488 users visited in the last hour
Content Search
Users
Tags
Badges
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6