Showing : Rnaseq • reset
8
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SGSeq: moving toward diffex from SGSeq analysis
sgseq rnaseq
updated 3 days ago by • 0 • written 6.7 years ago by ▴ 80
0
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2
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Single-Cell Data Simulation from Bulk RNA-seq
SingleCell RNASeq RNASeqData scRNAseq
updated 22 days ago by • 0 • written 17 months ago by • 0
1
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3
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872
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How to tell and visualize up/down regulation of pathways from clusterprofiler gsea output
clusterProfiler RNASeq
updated 15 days ago by ★ 1.2k • written 14 months ago by ▴ 10
3
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2
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223
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Log-cpm values from limma
limma edgeR RNASeq
21 days ago • updated 6 hours ago Shaimaa Gamal • 0
0
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2
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221
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RNAseq:Technical replicates from different batches
technicalReplicates BatchEffect limma RNASeq
20 days ago • updated 17 days ago catv • 0
0
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2
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173
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limma-voom: Calculate the log-fold change in gene expression within a sample
limma RNASeq voom
written 16 days ago by • 0
0
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3
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166
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Differences in differential analysis methods for RNA-Seq
DESeq2 StatisticalMethod Proteomics DifferentialExpression RNASeq
updated 7 days ago by ★ 4.1k • written 7 days ago by • 0
0
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1
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156
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DESEQ2 IHW and Apelgm method for Shrinkage (adding s values to FDR)
DESeq2 RNAseq
updated 15 days ago by 42k • written 15 days ago by • 0
0
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1
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143
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Can you find the correct transcript in scRNA seq data
scRNAseq RNAseq
updated 29 days ago by ★ 4.1k • written 4 weeks ago by • 0
0
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1
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115
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ONT long-read RNA sequencing - data analysis options
DESeq2 LongRead DEXSeq IsoformSwitchAnalyzeR RNASeq
updated 21 days ago by 42k • written 21 days ago by • 0
10 results • Page 1 of 1
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Comment: How to use bootRanges to bootstrap small RNA loci (nullranges package) by Poonam • 0
That ll be helpful. Thank you.
Comment: Log-cpm values from limma by Shaimaa Gamal • 0
I have performed RUVg correction and extracted W, factors of unwanted variation. According to limma guide, > In the limma approach to RNA…
Comment: DSS CpG coverage threshold by j.gilbert • 0
Might be a bit late for the original poster :') but in case anyone else is wondering, the DSS user guide says: *Q: Do I need to filter out…
Comment: How to use bootRanges to bootstrap small RNA loci (nullranges package) by Michael Love 42k
Segmentation is of the whole genome, I'll write some code for doing this later today.
Comment: How to use bootRanges to bootstrap small RNA loci (nullranges package) by Michael Love 42k
I'll take a look later. For next time, I've edited your post by enclosing the code in triple backticks (on their own link). This properly …
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Bioconductor 3.19 is Released!
A: Volcanoplot with limma - RAW P-values or Adj.P-Values
Answer: Mac ARM64 build report for BioC 3.19 from 'kjohnson3' reporting ERROR which it
Comment: Mac ARM64 build report for BioC 3.19 from 'kjohnson3' reporting ERROR which it
Answer: minfi latest update for EPIC V2 chip
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