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limma technical replicates and biological replicates in same design
limma
SANTA
14.7 years ago • updated 4.9 years ago
Gordon Smyth
50k
0
votes
1
reply
1.2k
views
limma technical replicates and biological replicates in the same design
limma
SANTA
limma
SANTA
updated 4.9 years ago by
Gordon Smyth
50k • written 14.7 years ago by
Marcelo Laia
▴ 450
0
votes
0
replies
1.2k
views
FOSBE 2012
SANTA
SANTA
12.0 years ago
mabawsa
▴ 20
0
votes
5
replies
1.2k
views
Selected probes from a given probeset
Microarray
SANTA
Microarray
SANTA
12.1 years ago
Ramiro Rodríguez
▴ 30
0
votes
0
replies
1.3k
views
Bioinformatics course - October 2011 Registration is now open
Microarray
Cancer
biomaRt
ArrayExpress
genomes
SANTA
Microarray
Cancer
biomaRt
genomes
12.6 years ago
Claude Chelala
▴ 40
0
votes
0
replies
1.5k
views
[job] Postdoc position on the bioinfomatics of epigenetic circuits in genome programming and reprogramming at the European Institute of Oncology in M…
RNASeq
ChIPSeq
Epigenetics
Cancer
chipseq
SANTA
RNASeq
ChIPSeq
Epigenetics
Cancer
SANTA
12.8 years ago
stefano iacus
▴ 430
0
votes
1
reply
1.2k
views
question on makeTranscriptDbFromUCSC
Cancer
rtracklayer
GenomicRanges
PING
SANTA
Cancer
rtracklayer
GenomicRanges
PING
SANTA
updated 13.9 years ago by
Ping Ma
▴ 10 • written 13.9 years ago by
Hervé Pagès
16k
0
votes
0
replies
878
views
limma technical replicates and biological replicates in the same design
limma
SANTA
limma
SANTA
14.7 years ago
Naomi Altman
★ 6.0k
0
votes
0
replies
874
views
Bioconductor Digest, Vol 79, Issue 20
Annotation
limma
SANTA
Annotation
limma
SANTA
14.7 years ago
Gordon Smyth
50k
0
votes
0
replies
816
views
OFF TOPIC high-density SSU rRNA microarray
Microarray
SANTA
Microarray
SANTA
14.7 years ago
Marcelo Laia
▴ 450
0
votes
0
replies
940
views
[limma] Possible bug on read.maimages function ?
Annotation
limma
SANTA
Annotation
limma
SANTA
14.7 years ago
Marcelo Laia
▴ 450
0
votes
1
reply
1.2k
views
help needed on avereps function
Normalization
probe
limma
SANTA
Normalization
probe
limma
SANTA
updated 14.9 years ago by
Erika Melissari
▴ 250 • written 14.9 years ago by
Francois Pepin
★ 1.3k
0
votes
0
replies
1.4k
views
limma Time Course Experiments question
graph
limma
SANTA
graph
limma
SANTA
15.2 years ago
Marcelo Laia
▴ 450
0
votes
5
replies
1.8k
views
Expressionset from ArrayExpress processed data
ArrayExpress
SANTA
ArrayExpress
SANTA
updated 15.3 years ago by
Martin Morgan
25k • written 15.3 years ago by
Yovanny Izquierdo Núñez
▴ 20
0
votes
0
replies
1.0k
views
Job: Statistical Analyst - Affymetrix, Inc.
Microarray
Genetics
Classification
SANTA
Microarray
Genetics
Classification
SANTA
19.1 years ago
Higgs, Debi
▴ 10
0
votes
4
replies
1.3k
views
Affymetrix file parsers released under LGPL open source license
SANTA
SANTA
updated 19.4 years ago by
Harry Mangalam
▴ 60 • written 19.4 years ago by
Lelivelt, Mike
▴ 50
0
votes
1
reply
1.1k
views
PLIER is available as open source
plier
SANTA
plier
SANTA
updated 19.6 years ago by
Francois Collin
▴ 50 • written 19.6 years ago by
Lelivelt, Mike
▴ 50
0
votes
0
replies
975
views
Affymetrix Postdoctoral Opportunity
Microarray
SANTA
Microarray
SANTA
20.5 years ago
VanLieu, Connie
▴ 10
18 results • Page
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Answer: Help with infinite recursion - non-zero exit status in installation of GenomeInf
by
James W. MacDonald
66k
Maybe just try again? ``` > install("GenomeInfoDbData", force = TRUE) 'getOption("repos")' replaces Bioconductor standard repositorie…
Comment: Help with infinite recursion - non-zero exit status in installation of GenomeInf
by
Brandon
• 0
Hello, As an update, I am able to install and load GenomeInfoDb successfully in a fresh renv in my WSL distro. However, I'm not sure what …
Comment: slingshot: error with plot3d.SlingshotDataSet
by
Kelly Street
• 0
This issue has been addressed [on GitHub][1]. [1]: https://github.com/kstreet13/slingshot/issues/249
Comment: Slightly different count plots from R and spreadsheet
by
Michael Love
42k
Change timepoint to an integer in the data frame: ``` as.numeric(as.character( <factor> )) ``` Then it should make points instead of boxe…
Answer: WGNCA kME vs. kIM
by
Vitor
• 0
You can compare kIM and kME within module assignments. The plot below is for my network (I used Pearson correlation and signed network). !…
Votes
Including squared covariates to account for non-linear dependencies in differential gene expression analysis
DESeq2 DE gene expression of scRNA-seq pseudobulk
Answer: Multiple factor DSEq2 result generates weird volcano plot
DESeq2 for single cell pseudobulk processing
Simultaneously adding two different covariates in the model gives error in DESeq2.
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