Showing : SNP • reset
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Any R Package To Detect Copy Neutral LOH for SNP 6.0 Array Data
microarray affy snp
11.3 years ago sun ▴ 100
5
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5
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5.0k
views
SNP Function Information from biomaRt
biomart snp nonsynonymous
updated 11.4 years ago by 21k • written 11.4 years ago by ▴ 10
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ChIPpeakAnno
SNP Annotation annotate convert SNP Annotation annotate convert
11.5 years ago Julie Zhu ★ 4.3k
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6
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3.3k
views
crlmm : copy number and genotyping of Illumina data
SNP Annotation Normalization crlmm copynumber SNP Annotation Normalization crlmm
updated 11.7 years ago by ▴ 1000 • written 11.7 years ago by ▴ 160
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1
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2.9k
views
help with analysis of genotyping data from Illumina HumanOmni5-4v1_B chip
SNP VariantAnnotation Annotation probe VariantAnnotation GWASTools SNP VariantAnnotation
updated 11.7 years ago by ▴ 890 • written 11.7 years ago by ▴ 160
0
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1
reply
1.6k
views
SNP ID mapping with oligo package (pd.genomewidesnp.6)
SNP SNP
updated 11.7 years ago by 6.7k • written 11.7 years ago by ▴ 10
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1.3k
views
SNP ID mapping with Oligo package
SNP SNP
11.7 years ago Guest User ★ 13k
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0
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1.9k
views
minfi release 1.8
SNP Annotation GO probe SNPlocs PROcess minfi bumphunter ChAMP SNP Annotation GO probe
11.8 years ago swarmqq@gmail.com ▴ 10
0
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1
reply
2.2k
views
snpStats reference allele used in genetic associations?
SNP Category snpStats SNP Category snpStats
updated 11.8 years ago by 6.7k • written 11.8 years ago by ★ 13k
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4
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2.6k
views
Help with sliding window analysis on GRanges object
SNP IRanges SNP IRanges
updated 11.9 years ago by ★ 11k • written 11.9 years ago by ▴ 140
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4
replies
1.8k
views
GWASdata
SNP affy SNP affy
11.9 years ago Naomi Altman ★ 6.0k
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0
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4.7k
views
Bioconductor 2.14 is released
BiocViews aCGH SNP Sequencing RNASeq ChIPSeq miRNA Microarray qPCR Metabolomics Coverage
11.9 years ago Dan Tenenbaum ★ 8.2k
0
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5
replies
1.9k
views
affy( ) error with mas5()
SNP affy PROcess SNP affy PROcess
updated 11.9 years ago by 68k • written 11.9 years ago by ▴ 110
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0
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1.4k
views
rehh package for iHS and Rsb
SNP SNP
11.9 years ago Abugri James ▴ 20
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0
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1.6k
views
crlmm problem
SNP convert beadarray crlmm SNP convert beadarray crlmm
11.9 years ago Matthias Arnold ▴ 10
0
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3
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2.2k
views
CRLMM Annotation file
SNP Annotation cdf SNP Annotation cdf
updated 12.0 years ago by 68k • written 12.0 years ago by ▴ 40
0
votes
1
reply
2.7k
views
crlmm : copy number and genotyping of Illumina data
SNP Annotation Normalization crlmm copynumber SNP Annotation Normalization crlmm
updated 12.0 years ago by ▴ 1000 • written 12.0 years ago by ▴ 160
0
votes
3
replies
2.5k
views
minfi release 1.8
SNP Annotation GO probe SNPlocs PROcess minfi bumphunter ChAMP SNP Annotation GO probe
updated 12.1 years ago by ▴ 20 • written 12.1 years ago by ★ 4.2k
0
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2
replies
2.0k
views
crlmm problem
SNP beadarray crlmm SNP beadarray crlmm
12.1 years ago Aaerp ▴ 40
0
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0
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1.6k
views
minfi release 1.8
SNP Annotation minfi bumphunter SNP Annotation minfi bumphunter
12.1 years ago C T ▴ 20
0
votes
3
replies
2.2k
views
Error reading imputed file using snpStats package
SNP snpStats SNP snpStats
updated 12.1 years ago by 6.7k • written 12.1 years ago by ▴ 50
0
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2
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2.5k
views
help with analysis of genotyping data from Illumina HumanOmni5-4v1_B chip
SNP Annotation SNP Annotation
updated 12.1 years ago by ▴ 890 • written 12.1 years ago by ▴ 190
0
votes
1
reply
2.6k
views
Reading IDAT files with illuminaio
SNP illuminaio SNP illuminaio
updated 12.2 years ago by ★ 6.5k • written 12.2 years ago by ★ 6.6k
0
votes
2
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2.6k
views
minfi release 1.8
SNP Annotation minfi bumphunter SNP Annotation minfi bumphunter
updated 12.2 years ago by ★ 6.5k • written 12.2 years ago by ▴ 30
2
votes
2
replies
2.6k
views
Converting single GRanges object as per chromosome GRangeList
SNP GO convert SNP GO convert
updated 12.2 years ago by ★ 13k • written 12.2 years ago by ▴ 260
0
votes
1
reply
1.9k
views
minfi release 1.8
SNP Annotation minfi bumphunter SNP Annotation minfi bumphunter
updated 12.3 years ago by ▴ 30 • written 12.3 years ago by ★ 6.5k
0
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2
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7.5k
views
how to obtain base counts from BAM file at specific genomic coordinates
SNP Sequencing Coverage Alignment Cancer Biostrings PROcess IRanges GenomicRanges SNP
updated 12.3 years ago by ★ 11k • written 12.3 years ago by 16k
0
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0
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4.9k
views
Bioconductor 2.13 is released
BiocViews aCGH SNP Transcription Sequencing miRNA Microarray Genetics Proteomics Coverage
12.4 years ago Dan Tenenbaum ★ 8.2k
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0
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1.4k
views
Problem in reading SNP hapmap data
SNP HapMap SNP HapMap
12.4 years ago Xiaolian Yuan ▴ 30
0
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3
replies
995
views
Hello
SNP SNP
updated 12.4 years ago by 25k • written 12.4 years ago by ▴ 20
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1
reply
1.1k
views
longitudinal GWAS analysis
SNP SNP
updated 12.5 years ago by ★ 13k • written 12.5 years ago by ▴ 40
0
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1
reply
1.8k
views
Way to extract population specific genotype from 1000 genome
SNP Cancer SNP Cancer
updated 12.6 years ago by 6.7k • written 12.6 years ago by ▴ 260
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1
reply
1.8k
views
GWATools use in creating ncdf files
SNP Annotation cdf GWASTools SNP Annotation cdf GWASTools
updated 12.6 years ago by ▴ 890 • written 12.7 years ago by ▴ 60
0
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1
reply
896
views
ReadGappedAlignments and FindOverlaps
SNP SNP
updated 12.6 years ago by ★ 11k • written 12.6 years ago by ★ 13k
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0
replies
1.2k
views
getting genotypes with oligo package
SNP oligo crlmm SNP oligo crlmm
12.7 years ago Guest User ★ 13k
0
votes
1
reply
955
views
pulling out specific lines from a bam file
SNP SNP
updated 12.7 years ago by 25k • written 12.7 years ago by ★ 13k
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0
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1.1k
views
Help with ensembl variation biomaRt query
SNP biomaRt SNP biomaRt
12.7 years ago William Noderer ▴ 10
0
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3
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4.1k
views
SNP annotation in R
SNP SNP
12.7 years ago Ina Hoeschele ▴ 620
0
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5
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2.4k
views
GWATools use in creating ncdf files
SNP Annotation cdf GWASTools SNP Annotation cdf GWASTools
updated 12.7 years ago by ▴ 60 • written 12.7 years ago by ▴ 890
0
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2
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4.8k
views
From location to get the SNP rs ID
SNP Cancer SNPlocs ASSIGN SNP Cancer SNPlocs ASSIGN
updated 12.7 years ago by 16k • written 12.7 years ago by ▴ 970
0
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3
replies
2.0k
views
GWATools use in creating ncdf files
SNP cdf GWASTools SNP cdf GWASTools
updated 12.7 years ago by ▴ 60 • written 12.7 years ago by ▴ 890
0
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1
reply
1.1k
views
R crash on getBM query
SNP Annotation biomaRt SNP Annotation biomaRt
updated 12.8 years ago by 21k • written 12.8 years ago by ▴ 10
0
votes
5
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4.5k
views
how to convert genotype snp matrix to nucleotide genotypes?
SNP convert snpMatrix SNP convert snpMatrix
updated 12.8 years ago by 6.7k • written 12.8 years ago by ▴ 20
0
votes
1
reply
1.2k
views
transform gwaa.data (Genabel) to snp.matrix (chopsticks)
SNP SNP
updated 12.9 years ago by ★ 1.3k • written 12.9 years ago by ▴ 170
0
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6
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2.4k
views
need help for the study design of a RNA-Seq project
SNP Sequencing SNP Sequencing
12.9 years ago shirley zhang ★ 1.0k
0
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1
reply
1.4k
views
Annotated a snp list to find where these snp are located.
SNP annotate SNP annotate
updated 12.9 years ago by ★ 6.8k • written 12.9 years ago by ▴ 970
0
votes
1
reply
1.8k
views
col.summary error in snpStats
SNP Sequencing Annotation snpMatrix snpStats SNP Sequencing Annotation snpMatrix snpStats
updated 12.9 years ago by 6.7k • written 12.9 years ago by ▴ 10
0
votes
1
reply
1.8k
views
Crlmm package
SNP Annotation Normalization crlmm SNP Annotation Normalization crlmm
updated 13.0 years ago by ▴ 1000 • written 13.0 years ago by ▴ 400
0
votes
5
replies
2.3k
views
Visualization of alignments with mismatch bases
SNP Coverage Alignment Visualization ggbio SNP Coverage Alignment Visualization ggbio
updated 13.0 years ago by ▴ 420 • written 13.0 years ago by ★ 11k
0
votes
1
reply
2.5k
views
SNPassoc package data upload
SNP SNP
updated 13.0 years ago by ★ 6.8k • written 13.0 years ago by ▴ 50
343 results • Page 2 of 7
Recent ...
Replies
Comment: Question on processing compound protein groups in limpa by JKim • 0
Many thanks. I appreciate your advice.
Answer: Question on processing compound protein groups in limpa by Gordon Smyth 53k
Different people have different ways of dealing with compound protein groups. You could just leave them in the analysis, in which case limp…
Answer: Correct usage of limpa for protein input by Gordon Smyth 53k
limpa can work on protein-level quantifications, but they must be intensity-based and must be on the log scale. From what I read (<https://…
Comment: A problem occurs when running the monocle2 by a2a2hset32aa • 0
Troubleshooting monocle2 errors in R 4.5.1 often points to package incompatibilities, particularly with newer versions of igraph. For resea…
Comment: Deadline Extended: EuroBioC2026 Call for Abstracts by a2a2hset32aa • 0
Attending EuroBioC2026 is an excellent way for researchers to explore the intersection of technology and biology. For those seeking high qu…
Votes
Answer: Question on processing compound protein groups in limpa
Answer: Correct usage of limpa for protein input
Answer: Correct usage of limpa for protein input
Answer: Correct usage of limpa for protein input
A: Interpretaion of dendrogram height in WGCNA?
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Scholar to Gordon Smyth 53k
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