Showing : SNP • reset
0
votes
2
replies
2.2k
views
find gene symbols immediately flanking before and after a SNP position
SNP SNP
updated 12.9 years ago by ★ 6.8k • written 12.9 years ago by ▴ 220
1
vote
3
replies
1.8k
views
VariantAnnotation package with snp location
SNP VariantAnnotation VariantAnnotation SNP VariantAnnotation VariantAnnotation
updated 12.9 years ago by ★ 4.2k • written 12.9 years ago by ▴ 970
0
votes
3
replies
1.3k
views
VariantAnnotation: fine define Locating variants in and around genes
SNP VariantAnnotation VariantAnnotation SNP VariantAnnotation VariantAnnotation
updated 13.0 years ago by ★ 6.8k • written 13.0 years ago by ▴ 970
0
votes
0
replies
1.1k
views
biomaRt error
SNP biomaRt SNP biomaRt
13.0 years ago Christopher T Gregg ▴ 210
0
votes
3
replies
2.4k
views
Problem locating SNP by rsID for SNPlocs.Hsapiens.dbSNP.20120608 package Bioconductor x
SNP SNPlocs SNP SNPlocs
updated 13.0 years ago by 16k • written 13.0 years ago by ▴ 40
0
votes
0
replies
1.2k
views
Problem locating SNP by rsID for SNPlocs.Hsapiens.dbSNP.20120608 package
SNP SNPlocs SNP SNPlocs
13.0 years ago Christina Chaivorapol ▴ 40
0
votes
0
replies
1.1k
views
Using different file formats with oligo and analysis packages using oligo
SNP Microarray qPCR cycle SNP Microarray qPCR cycle
13.0 years ago Hans Thompson ▴ 30
0
votes
3
replies
8.3k
views
Retrieving SNP rs IDs using biomaRt getBM()
SNP SNP
updated 13.2 years ago by 16k • written 13.2 years ago by ★ 13k
0
votes
0
replies
1.5k
views
Using aCGH library on Affymetrix Cytogenetics 2.7M microarray data
aCGH SNP PROcess aCGH aCGH SNP PROcess aCGH
13.2 years ago Guest User ★ 13k
0
votes
0
replies
1.3k
views
SNP6.0 annotation
SNP Annotation probe annotate SIM SNP Annotation probe annotate SIM
13.2 years ago Guest User ★ 13k
0
votes
4
replies
4.1k
views
rs ids Retrieval using biomaRt
SNP biomaRt SNP biomaRt
updated 13.2 years ago by 6.7k • written 13.2 years ago by ▴ 760
0
votes
1
reply
1.3k
views
Convert Affy SNP array 0, 1, 2 to A C G T
SNP affy convert SNP affy convert
13.2 years ago Fabrice Tourre ▴ 970
0
votes
0
replies
1.4k
views
NAs in snp.rhs.tests
SNP illuminaHumanv1 affy crlmm SNP illuminaHumanv1 affy crlmm
13.3 years ago maria traka IFR ▴ 30
0
votes
1
reply
1.8k
views
Illumina SNP array annotation
SNP SNP
updated 13.3 years ago by 68k • written 13.3 years ago by ▴ 970
0
votes
4
replies
2.1k
views
GGtools: transScores function returning cis eQTL
SNP Annotation probe SNPlocs GGtools SNP Annotation probe SNPlocs GGtools
updated 13.3 years ago by 6.7k • written 13.3 years ago by ★ 13k
0
votes
0
replies
3.6k
views
Bioconductor 2.11 is released
BiocViews SNP Transcription Sequencing miRNA Microbiome Microarray qPCR Genetics Coverage
13.3 years ago Dan Tenenbaum ★ 8.2k
0
votes
2
replies
1.6k
views
Printing Alt alleles using VariantAnnotation
SNP Annotation SNP Annotation
updated 13.3 years ago by 68k • written 13.3 years ago by ★ 1.1k
0
votes
0
replies
948
views
SNP call estimation from Fluidigm Microarrays
SNP Normalization SNP Normalization
13.4 years ago Hans Thompson ▴ 30
0
votes
0
replies
1.8k
views
the set of SNPs difference between Genome build 37.1 and 37.3
SNP HapMap SNP HapMap
13.4 years ago shirley zhang ★ 1.0k
2
votes
1
reply
2.5k
views
overlap GRangesList and vcf
SNP SNP
updated 13.4 years ago by ★ 6.8k • written 13.4 years ago by ▴ 120
0
votes
6
replies
7.0k
views
Calculate heterozygosity % using SNP genotype data
SNP snpMatrix SNP snpMatrix
updated 13.5 years ago by 6.7k • written 13.5 years ago by ▴ 210
0
votes
1
reply
1.1k
views
rtracklayer import.gff3 mangling scores
SNP rtracklayer SNP rtracklayer
updated 13.5 years ago by ★ 11k • written 13.5 years ago by ▴ 270
0
votes
3
replies
5.2k
views
Translating AB/BB/AA into a SNP with Illumina data
SNP crlmm SNP crlmm
updated 13.5 years ago by ▴ 890 • written 13.5 years ago by ▴ 480
0
votes
3
replies
1.7k
views
help with genotyping
SNP SNP
updated 13.5 years ago by ★ 4.3k • written 13.5 years ago by ▴ 20
0
votes
0
replies
1.0k
views
minor allele frequency comparison from two softwares based on the same sequencing data
SNP Sequencing SNP Sequencing
13.5 years ago Jiafen ▴ 10
0
votes
1
reply
1.5k
views
boxplot/histograms on preprocessed SNP affy data with crlmm package
SNP oligo crlmm SNP oligo crlmm
updated 13.6 years ago by ★ 4.3k • written 13.6 years ago by ▴ 840
0
votes
1
reply
2.8k
views
Calculate heterozygosity % using SNP genotype data
SNP SNP
updated 13.6 years ago by ★ 6.8k • written 13.6 years ago by ▴ 130
0
votes
0
replies
1.3k
views
statistics from snpStats objects
SNP snpStats SNP snpStats
13.6 years ago james power ▴ 10
0
votes
1
reply
1.1k
views
BiomaRt Query error Edited
SNP biomaRt SNP biomaRt
updated 13.6 years ago by ★ 7.2k • written 13.6 years ago by ▴ 760
0
votes
0
replies
926
views
BiomaRt query error
SNP biomaRt SNP biomaRt
13.6 years ago Voke AO ▴ 760
0
votes
1
reply
1.3k
views
oligo: error in crlmm function
SNP oligo SNP oligo
updated 13.6 years ago by ★ 4.3k • written 13.6 years ago by ▴ 840
0
votes
3
replies
3.6k
views
GWAS with Affymetrix SNP 6.0
SNP oligo snpMatrix snpStats SNP oligo snpMatrix snpStats
updated 13.6 years ago by 6.7k • written 13.6 years ago by ▴ 20
0
votes
3
replies
1.7k
views
Package for doing Copy number analsysi with LOH
SNP SNP
updated 13.6 years ago by ★ 2.4k • written 13.7 years ago by ▴ 10
0
votes
1
reply
1.2k
views
Finding coding SNPs with predictCoding
SNP Annotation BSgenome BSgenome GenomicFeatures cycle genomes SNP Annotation BSgenome
updated 13.7 years ago by ★ 1.7k • written 13.7 years ago by ★ 6.8k
0
votes
1
reply
2.0k
views
Copy Number Analysis across multiple SNP array plaforms
SNP Cancer crlmm ffpe SNP Cancer crlmm ffpe
updated 13.7 years ago by ▴ 210 • written 13.7 years ago by ▴ 20
0
votes
1
reply
1.8k
views
FW: Overlay Gene Expression on SNP (copy number) data
SNP Coverage Network Cancer TranscriptDb IRanges RCytoscape ggbio Gviz SNP Coverage
updated 13.7 years ago by ★ 4.2k • written 13.7 years ago by ▴ 370
0
votes
0
replies
1.3k
views
Normalized values in oligo::crlmm and oligo::snprma don't match?
SNP Normalization oligo crlmm SNP Normalization oligo crlmm
13.7 years ago Denise Mak ▴ 10
0
votes
3
replies
1.4k
views
Overlay Gene Expression on SNP (copy number) data
SNP SNP
updated 13.7 years ago by ▴ 420 • written 13.7 years ago by ▴ 370
0
votes
2
replies
1.6k
views
Finding coding SNPs with predictCoding
SNP Annotation BSgenome ctc BSgenome cycle genomes SNP Annotation BSgenome ctc BSgenome
updated 13.8 years ago by ★ 1.7k • written 13.8 years ago by ★ 6.8k
0
votes
1
reply
1.9k
views
DNAcopy for CNV in SNP Affy 6.0
SNP affy DNAcopy SNP affy DNAcopy
13.8 years ago Ekta Jain ▴ 370
0
votes
4
replies
3.1k
views
Copy number analysis
SNP affy SNP affy
updated 13.8 years ago by ▴ 210 • written 13.8 years ago by ★ 13k
0
votes
0
replies
1.4k
views
Copy number analysis
SNP affy VanillaICE SNP affy VanillaICE
13.8 years ago Rob Scharpf ▴ 250
0
votes
2
replies
1.1k
views
New to Bioconductor is there a better way?
SNP GO SNP GO
updated 13.9 years ago by ★ 6.5k • written 13.9 years ago by ▴ 40
0
votes
11
replies
2.4k
views
error in locateVariants for a GRanges object
SNP SNP
updated 13.9 years ago by 25k • written 13.9 years ago by ▴ 380
0
votes
4
replies
2.1k
views
snpStats, read.long, alleles in two columns
SNP Genetics snpStats SNP Genetics snpStats
updated 13.9 years ago by ▴ 20 • written 13.9 years ago by ▴ 30
0
votes
1
reply
957
views
classify SNPs
SNP SNP
updated 13.9 years ago by ★ 4.2k • written 13.9 years ago by ▴ 40
0
votes
5
replies
1.9k
views
Finding coding SNPs with predictCoding
SNP ctc SNP ctc
updated 13.9 years ago by ★ 1.7k • written 13.9 years ago by ★ 6.8k
0
votes
4
replies
2.0k
views
Finding coding SNPs with predictCoding
SNP VariantAnnotation BSgenome SNPlocs BSgenome VariantAnnotation SNP VariantAnnotation
updated 13.9 years ago by ★ 6.8k • written 13.9 years ago by ▴ 650
0
votes
12
replies
12k
views
Add extra columns to GRanges Metadata
SNP SNP
updated 13.9 years ago by ★ 4.2k • written 13.9 years ago by ▴ 970
0
votes
2
replies
7.2k
views
gplots Heatmap
SNP Transcription Sequencing RNASeq miRNA Microarray Annotation Normalization GO Cancer
updated 13.9 years ago by ★ 13k • written 13.9 years ago by ▴ 10
343 results • Page 3 of 7
Recent ...
Replies
Comment: DESeq2 - how many surrogate variables from svaseq, use of lfcshrink by ja569116 • 0
Hi @atpoint Thanks for the information. Could you please expand on when to use adjusted p-values vs nominal p-values. My understanding was …
Answer: limpa analysis advice by Gordon Smyth 53k
It is actually very hard to estimate the DPC from observed data, because the curve is function of unobserved intensities rather than a func…
Answer: When to use edgeR or limma by Gordon Smyth 53k
The short answer is that we generally prefer edgeR for applications with lots of small counts and limma for complex designs with random eff…
Comment: limpa-blank normalization and Spectronaut's PTM stoichiometry by Gordon Smyth 53k
I updated the above answer today.
Answer: When to use edgeR or limma by James W. MacDonald 68k
I would use edgeR's quasi-likelihood model for any analysis with a smaller number of observations (like 3 vs 3 or similar), but if you have…
Votes
Answer: When to use edgeR or limma
Answer: When to use edgeR or limma
Answer: When to use edgeR or limma
Answer: When to use edgeR or limma
A: deseq2 - paired samples in 2 sequencing types with very different library sizes
Awards • All
Popular Question to Lluís Revilla Sancho ▴ 760
Popular Question to nromerov • 0
Popular Question to Thomas Girke ★ 1.7k
Teacher to Gordon Smyth 53k
Popular Question to Stephanie M. Gogarten ▴ 890
Locations • All
The city by the bay, 59 minutes ago
France, 1 hour ago
United States, 2 hours ago
Sweden, 2 hours ago
China, 4 hours ago
Traffic: 1184 users visited in the last hour
Content Search
Users
Tags
Badges
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6