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Seqnames
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5
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2.6k
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Grange object subsetting using seqnames
Seqnames
makeGRangesFromDataFrame
GRanges
Subsetting
GenomicRanges
2.8 years ago
rtrivedi1
▴ 10
2
votes
1
reply
794
views
DNAStringSet to DNAStringSetList according to pattern in sequence names
dnastringset
dnastringsetlist
seqnames
5.5 years ago
s.ghignone
▴ 10
0
votes
1
reply
980
views
GenomeInfoDb: where are the genome patches?
seqnames
genomeinfodb
updated 6.9 years ago by
Hervé Pagès
16k • written 6.9 years ago by
matt.chambers42
▴ 10
0
votes
2
replies
1.8k
views
GenomicRanges: `seqnames<-` can not work as expected
genomicranges
seqnames
factor
7.5 years ago
wcstcyx
▴ 30
0
votes
1
reply
883
views
error in noGGi
software error
seqnames
characters
r
chipseq
8.0 years ago
awakumaya
• 0
17
votes
4
replies
16k
views
How to properly sort GRanges?
granges
genomicranges
sort
seqnames
order
updated 9.1 years ago by
yinghua
▴ 30 • written 9.5 years ago by
enricoferrero
▴ 660
0
votes
6
replies
6.3k
views
GRanges: problem with multiple seqnames and seqlengths
GRanges
seqnames
seqlengths
IRanges
9.6 years ago
topher.hamm
• 0
7 results • Page
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Comment: Deseq2 and Normalization of RNA sequencing data
by
kcarey
• 0
Noise in terms of expression...to make sure that the information reported is not due to artifacts and actually expression. When I had FPKM …
Answer: NEED FOR NESSASORY HELP
by
Gordon Smyth
50k
Is this quesion related to your earlier question? https://support.bioconductor.org/p/9157127/ If you've already done an edgeR analysis, yo…
Answer: Gene-by-sample covariates in limma
by
Gordon Smyth
50k
Your first method would be valid if, instead of taking ratios, you instead used the differences between the log-transformed 13C and 12C int…
Answer: Why does GSEA on edgeR results for randomized samples give highly significant p-
by
Gordon Smyth
50k
You have discovered something that I have pointed out many times on this forum. fgsea does not implement the classic GSEA method published …
Comment: Once again a "Model matrix not full rank"
by
James W. MacDonald
65k
In that case both time and treatment are identical things, so choose one and go with it.
Votes
Bioconductor 3.19 is Released!
A: Error in DESeqDataSet : some values in assay are not integers
Bioconductor 3.19 is Released!
Bioconductor 3.19 is Released!
Answer: DEseq2 coefficient
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