Bioconductor Spatial

Showing : Spatial • reset

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1.1k

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Proteomics JobPosting SingleCell Spatial SpatialExperiment

23 months ago Peter Hickey ▴ 760

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1.5k

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omics Spatial postdoc

2.9 years ago Wolfgang Huber ★ 13k

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1.3k

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pRoloc proteomics Spatial Proteomics MassSpectrometry

2.9 years ago Laurent Gatto 1.6k

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1.2k

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SingleCell Spatial RNA-seq

3.0 years ago Jenny Drnevich ★ 2.0k

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1.2k

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SingleCell rnaseq methylationArrayAnalysis Spatial

written 3.2 years ago by Jenny Drnevich ★ 2.0k

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Comment: Error message that there is no package called Biobase by DamionLedner99 • 0

thanks for sharing!!! https://cran.r-project.org/

Comment: msmsTests, inconsistent sign between lFC.Av and LogFC by Ben • 0

Continued here due to posting difficulties: Extract from the results table: ``` Inhibitor Vehicle lFC.Av LogFC ... F1 0.0 27…

Answer: DESeq2 for 16S rRNA Analysis by James W. MacDonald 68k

The Wald test is only meant for comparison of two groups at a time, so it depends on what you mean by 'analyze across multiple groups at a …

Comment: MetaDE.pvalue: Error in xj[i]: invalid subscript type 'list' by varying.mastodon.isyn • 0

Oh, that error! I remember wrestling with that one for hours when I was first learning Python. Turns out I was trying to use a list itself …

Comment: Confirm that OpenStats will not be archived (pryr dependency) by Marina • 0

Thank you!

Votes

Comment: Are transformed values from rlog /vst log2 normalized counts?

Answer: Are transformed values from rlog /vst log2 normalized counts?

A: DESeq2 normalization vs VST vs rlog

Answer: How to directly decet the outlier samples (libraries) in EdgeR pipeline

Answer: Confused about the CPM and TMM normalization in edgeR

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Teacher to Michael Love 43k

Supporter to fl ▴ 20

Popular Question to James W. MacDonald 68k