Bioconductor Spatial

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998

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Proteomics JobPosting SingleCell Spatial SpatialExperiment

20 months ago Peter Hickey ▴ 760

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1.4k

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omics Spatial postdoc

2.6 years ago Wolfgang Huber ★ 13k

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1.2k

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pRoloc proteomics Spatial Proteomics MassSpectrometry

2.7 years ago Laurent Gatto 1.6k

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1.1k

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SingleCell Spatial RNA-seq

2.7 years ago Jenny Drnevich ★ 2.0k

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1.1k

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SingleCell rnaseq methylationArrayAnalysis Spatial

written 2.9 years ago by Jenny Drnevich ★ 2.0k

5 results • Page 1 of 1

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Comment: After running samtools, the featureCounts command crashed. by eja.gssssse.r.m • 0

The buffer overflow detected error in your featureCount step usually indicates that the program is trying to write more data into memory …

Comment: gene Set with high AUC score but no cells assigned to cell type by eja.gssssse.r.m • 0

It sounds like your AUCell results may be showing high AUC scores without cell assignment due to thresholding or scoring cutoffs. Think of …

Answer: "Watched Tags" are being erased rather than updated by shepherl 4.2k

This should now be resolved

Answer: Question about collapsing ASVs by genus level during DESeq2 analysis by Michael Love 43k

I'll just note that microbiome stats folks tend to use other tools than DESeq2. > several ASVs belong to the same genus but are not iden…

Comment: Integration: Paired-end vs healthy single-end from a different source by igkryycpinmshzugby • 0

Yes, Option 1 (technical homogenization) reprocessing paired-end samples as single-end using only R1 is the most defensible approach when l…

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Bioconductor 3.22 Released!

Comment: "Watched Tags" are being erased rather than updated

Comment: deseq2 filter the low counts

Answer: DESeq2 interactions

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