Bioconductor Spatial

Showing : Spatial • reset

votes

replies

635

views

Proteomics JobPosting SingleCell Spatial SpatialExperiment

10 months ago Peter Hickey ▴ 750

votes

replies

1.1k

views

omics Spatial postdoc

22 months ago Wolfgang Huber ★ 13k

votes

replies

931

views

pRoloc proteomics Spatial Proteomics MassSpectrometry

23 months ago Laurent Gatto 1.6k

votes

889

views

SingleCell Spatial RNA-seq

23 months ago Jenny Drnevich ★ 2.0k

votes

870

views

SingleCell rnaseq methylationArrayAnalysis Spatial

written 2.1 years ago by Jenny Drnevich ★ 2.0k

5 results • Page 1 of 1

Recent ...

Replies

Comment: How to visualize these pathways using pathview by Guido Hooiveld ★ 4.1k

FYI: a similar, if not identical issue has been reported before (`pathview` has problems visualizing some pathways, but not all). You likel…

Comment: Why select top highly expressed genes based on normalized counts, but then plot by Quang NN ▴ 10

I see. Thank you ATpoint!

Comment: how should I apply "cpg.annotate" to TCGA methylation data in hg38 for HM450K? by Prakash Sah • 0

Thanks James!

Comment: Why select top highly expressed genes based on normalized counts, but then plot by ATpoint ★ 4.6k

I think I explained what the differences between approach 1 and 2 is in my answer. I assume that the tutorial uses vst because it is varian…

Comment: Why select top highly expressed genes based on normalized counts, but then plot by Quang NN ▴ 10

Thank you ATpoint for your responses. I am a bit confused because the difference between the two approaches is the selection of the genes…

Votes

Bioconductor Course, Kenya 2025: Applications Open!

Comment: can't install tscR

Answer: Csaw normalization strategies - general inquiry

A: DESeq2 interaction term

Comment: Recount3 data correspond to TCGA data

Awards • All