Showing : SpikeIn • reset
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Spike-in normalization method in ATACseq
sperm Drosophila_melanogaster ATACSeq Normalization SpikeIn
updated 5 months ago by ★ 4.8k • written 5 months ago by • 0
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2
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494
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Analysis of transcription inhibition with DESeq2
SpikeIn DESeq2 Normalization
written 8 months ago by • 0
0
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1
reply
715
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Problem with spike-ins (ERCC) in DESeq2 analysis after doing RUVg!
SpikeIn RUVSeq DESeq2 RUV
updated 9 months ago by 43k • written 9 months ago by • 0
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369
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Diffbind Error in socketConnection
DiffBind Errorinsocketconnection SpikeIn
12 months ago Virangika • 0
1
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2
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867
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DiffBind spike-in lib.sizes confusion
SpikeIn DiffBind
2.1 years ago Weisheng • 0
6
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2
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3.7k
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Clarification of what DESeq2::estimateSizeFactors controlGenes does and when it should *not* be used
DESeq2 SpikeIn Normalization DifferentialExpression
updated 2.2 years ago by ★ 4.8k • written 2.2 years ago by ▴ 10
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2
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How to use spike-in information (sequences from another species) with DESeq2::DESeq()
DESeq2 SpikeIn Normalization
updated 11 months ago by • 0 • written 2.2 years ago by ▴ 10
3
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4
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2.6k
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RiP RLE normalisation using spike-in peaks in DiffBind for ChIP-seq
DiffBind SpikeIn Normalization ChIP-seq csaw
2.3 years ago spg • 0
0
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0
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1.2k
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DiffBind spike-in normalisation with varying amounts of spike-in chromatin
DiffBind ChIPSeq Normalization SpikeIn
3.5 years ago Drew • 0
0
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0
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971
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Spike-In Cells for Normalization?
SpikeIn SingleCell
3.6 years ago mb1996 • 0
0
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2
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1.6k
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Using both spike in and TMM normalizations in ChIP-seq samples
ChIPSeq SpikeIn edgeR Normalization
3.7 years ago maria.soler • 0
7
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12
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5.3k
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Using edgeR and a spike-in to calculate absolute abundance
edgeR SpikeIn RNASeq
updated 18 months ago by • 0 • written 4.1 years ago by • 0
1
vote
9
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4.2k
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Spike-in normalization in EdgeR
CUTandRUN edgeR Normalization SpikeIn ChIPSeq
updated 2.4 years ago by ▴ 670 • written 4.5 years ago by ▴ 10
13 results • Page 1 of 1
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Answer: Version conflict when pushing to scQTLtools devel branch by shepherl 4.1k
There is a Bioconductor release today. There were notifications on the bioc-devel mailing list https://stat.ethz.ch/pipermail/bioc-devel…
Comment: DiffBind can't find a DAR by Mengjun • 0
The details about this question: I have 4 samples with 2 conditions( ctrl_1, ctrl_2, ko_1, ko_2), i use these 4 samples as input. Here is …
Comment: DiffBind can't find a DAR by Mengjun • 0
Thank you very much for pointing out this shortcoming. I will improve it.
Comment: samtools loading in R by Charlie • 0
This is obviously a very late answer but I had a similar error: > sh: samtools: command not found > > sh: samtools: command not found > …
Comment: Easiest way to convert read10xMolInfo data into a dataframe in R with gene label by njmcdirect • 0
https://www.www-njmcdirect.run/
Votes
Comment: GSVA ssGSEA vs. Broad implementation of ssGSEA
Comment: GSVA ssGSEA vs. Broad implementation of ssGSEA
Answer: GSVA ssGSEA vs. Broad implementation of ssGSEA
GSVA ssGSEA vs. Broad implementation of ssGSEA
Comment: biomaRt server error, and mirrors do not help
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