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Splatter
•
reset
3
votes
3
replies
2.3k
views
is SCEset fully abandoned in scran?
scran
scater
splatter
normalization
updated 6.5 years ago by
davis
▴ 90 • written 6.5 years ago by
wt215
• 0
0
votes
3
replies
2.0k
views
Trouble installing splatter
installation
splatter
7.0 years ago
luke.zappia
▴ 50
5
votes
2
replies
1.7k
views
Accessing normalized counts
splatter
singlecellexperiment
scater
6.1 years ago
luke.zappia
▴ 50
2
votes
3
replies
1.3k
views
splatter simulating paths
splatter
single cell
6.1 years ago
nikolaspapadop
▴ 10
0
votes
5
replies
1.2k
views
How to use Splatter to simulate a known number of DE genes in only two groups of cells ?
splatter
Splatter
updated 5.2 years ago by
luke.zappia
▴ 50 • written 5.2 years ago by
chenxofhit
• 0
0
votes
1
reply
1.1k
views
Control group size
splatter
6.5 years ago
luke.zappia
▴ 50
0
votes
1
reply
1.1k
views
Splatter: How to simulate cells in different groups and different path at the same time?
splatter
6.5 years ago
luke.zappia
▴ 50
1
vote
1
reply
969
views
Any pointers on simulating cell outliers?
splatter
simulation
6.0 years ago
luke.zappia
▴ 50
0
votes
1
reply
963
views
Splatter (unknown correlation between gene expression level in different cell types)
SingleCellData
splatter
updated 2.0 years ago by
luke.zappia
▴ 50 • written 2.0 years ago by
Fatima
• 0
4
votes
2
replies
945
views
Splatter: simulating fold changes for specific genes?
splatter
5.5 years ago
Brian Haas
▴ 90
0
votes
1
reply
915
views
Robustness of Splat cell grouping
splatter
6.9 years ago
luke.zappia
▴ 50
0
votes
2
replies
893
views
I cannot install the splatter on colab
splatter
biocmanager
written 3.1 years ago by
Tianyu
• 0
0
votes
1
reply
881
views
Simulating paths returns identical values
splatter
6.1 years ago
luke.zappia
▴ 50
1
vote
2
replies
842
views
Splatter: which parameters can cause individual variability( expression levels of genes should change across samples)
SingleCellExperiment
splatter
2.5 years ago
Fatima
• 0
0
votes
1
reply
727
views
DE analysis packages not detecting Splat DE simulated genes
splatter
updated 3.7 years ago by
luke.zappia
▴ 50 • written 3.7 years ago by
olympia.hardy13
• 0
0
votes
1
reply
651
views
change values on Differential Expression parameters
splatter
updated 4.6 years ago by
luke.zappia
▴ 50 • written 4.6 years ago by
jp3770
• 0
16 results • Page
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Answer: Once again a "Model matrix not full rank"
by
swbarnes2
★ 1.3k
Replicate numbers, like the 1 in control_1 are fine in sample names, but never add them to anything else in colData. From the computer's p…
Answer: limma Intercept vs No-intercept models completely changing DMR results?
by
Gordon Smyth
50k
I'll add a little bit of general advice to James' answer. You seem to have the misunderstanding that you can change the design matrix but …
Answer: package goseq seems to be not available on the latest version of R
by
Gordon Smyth
50k
It is true that goseq isn't available for Bioc 3.19. That is because goseq depends on txbmaker, which is itself not yet available for Bioc…
Answer: limma Intercept vs No-intercept models completely changing DMR results?
by
James W. MacDonald
65k
This part: ``` design_intercept <- model.matrix(~Alt+Sex+Age+PC1, data=targets_Sherpa) colnames(design_intercept) <- c("AltSHP_LA","Al…
Comment: CombineArrays for EPIC and EPIC V2
by
Kim
• 0
Thank you Tim, this is a great help in getting me started!
Votes
Answer: limma Intercept vs No-intercept models completely changing DMR results?
Answer: CombineArrays for EPIC and EPIC V2
Answer: Too many significant genes when integrating gtex and tcga
Comment: Too many significant genes when integrating gtex and tcga
A: Print Differentially Expressed Exons From Dexseq Results
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