Bioconductor StageR

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1.5k

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limma stageR decideTests

updated 5.9 years ago by Koen Van den Berge ▴ 180 • written 5.9 years ago by maltethodberg ▴ 180

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2.1k

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drimseq stageR dtu salmon rna seq

updated 6.4 years ago by Koen Van den Berge ▴ 180 • written 6.4 years ago by fiona.dick91 ▴ 60

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1.9k

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stageR rnaseqDTU DRIMSeq DEXSeq

5.8 years ago d-joester ▴ 20

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1.8k

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DEXSeq StageR rnaseqDTU

updated 6.1 years ago by Michael Love 43k • written 6.1 years ago by rbenel ▴ 40

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1.2k

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DESeq2 stageR

4 months ago alephreish • 0

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996

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DRIMSeq stageR

updated 5.7 years ago by Koen Van den Berge ▴ 180 • written 5.7 years ago by sdvie • 0

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596

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DEXSeq stageR

12 months ago jbono ▴ 10

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726

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stageR

updated 3.1 years ago by Koen Van den Berge ▴ 180 • written 3.2 years ago by giwa.ao • 0

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1.3k

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drimseq rnaseqdtu stager

updated 6.0 years ago by Michael Love 43k • written 6.0 years ago by Jack.Hearn • 0

9 results • Page 1 of 1

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Comment: Merge Replicates vs Mixed Model by abadgerw • 0

Thanks, @gabrielhoffman My understanding is that both options would still be mixed models: Even with technical replicates (3 wells per d…

Comment: Differential Expression Genes as Independent Variables by Dario Strbenac ★ 1.5k

Also, the reason why gene abundance is the dependent variable and is iterated over is that there are far more genes than there are samples …

Comment: rrvgo::calculateSimMatrix() error by Phila • 0

Thanks for sharing the solution. It helps me. [nced cloud][1] [1]: https://my-ncedcloud-login.us/

Comment: Merge Replicates vs Mixed Model by gabriel.hoffman ▴ 170

For your proteomics data, your normalization is correct. I had assumed it was RNA-seq because that is what I think about most. When using…

Comment: What type of counts data to import for performing Isoform analysis in edgeR by mohammedtoufiq91 ▴ 10

@gordonsmyth I will re-run Salmon with the --numGibbsSamples=50 option. Thank you.

Votes

Comment: What type of counts data to import for performing Isoform analysis in edgeR

Answer: What type of counts data to import for performing Isoform analysis in edgeR

Transcript-level differential expression using DESeq2

Comment: What type of counts data to import for performing Isoform analysis in edgeR

Answer: What type of counts data to import for performing Isoform analysis in edgeR

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