Bioconductor TCGAutils

Showing : TCGAutils • reset

votes

799

views

normalization RNASEQ Normalization TCGAutils TCGA

updated 24 months ago by ATpoint ★ 4.5k • written 24 months ago by Deniz • 0

votes

replies

2.1k

views

MultiAssayExperiment curatedTCGAData TCGAutils

4.0 years ago svlachavas ▴ 830

votes

replies

1.4k

views

MultiAssayExperiment curatedTCGAData TCGAutils

updated 4.0 years ago by Marcel Ramos 700 • written 4.0 years ago by svlachavas ▴ 830

votes

replies

1.5k

views

MultiAssayExperiment curatedTCGAData TCGAutils

updated 4.0 years ago by Marcel Ramos 700 • written 4.1 years ago by svlachavas ▴ 830

votes

replies

4.6k

views

TCGAutils TCGAbiolinks GenomicDataCommons

updated 5.4 years ago by Marcel Ramos 700 • written 5.4 years ago by Dario Strbenac ★ 1.5k

votes

890

views

TCGAutils

updated 5.6 years ago by Levi Waldron ★ 1.1k • written 5.6 years ago by vittorio.fortino • 0

votes

replies

1.6k

views

TCGAutils multiassayexperiment coad

updated 6.4 years ago by Marcel Ramos 700 • written 6.4 years ago by mario.zanfardino ▴ 160

7 results • Page 1 of 1

Recent ...

Replies

Comment: Differene between the Wald and LRT test for time-series gene expression data by Denise • 0

This makes a lot of sense, thank you very much!

Comment: Downloading Metagenomic Data with Higher Taxonomic Units by elozanoe • 0

Hi! I'm facing the same problem. Is there any easy way to output relative abundances of higher taxonomic units (up to kingdom), similar to…

Comment: Is it recommended to analyze different tissues together when using edgeR by Gordon Smyth 51k

Just plot the samples with plotMDS(). Alternatively you would use `voomLmFit()` with `sample.weights=TRUE` or `var.group=tissue`. In princ…

Comment: Handling Epic Array Data by Melisa Tecik • 0

Thanks a lot for the help. You saved my day

Answer: Differene between the Wald and LRT test for time-series gene expression data by James W. MacDonald 67k

The advantage to using the LRT is that it's an omnibus test that tells you if there are changes at any time point. If you have lots of time…

Votes

A: correcting the batch effects in Limma and SVA

A: Using of limma moderated t-test with "corrected" expression matrix resulting fr

Answer: Differene between the Wald and LRT test for time-series gene expression data

Answer: Using voom-transformed counts for unsupervised analyses (PCA, Random Forest, Ela

Awards • All