Showing : TCGAutils • reset
2
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727
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Error in download.file for TCGAutils::symbolsToRanges
TCGAutils
updated 8 months ago by 68k • written 8 months ago by ▴ 60
0
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1
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TCGA RNAseq Normalization
normalization RNASEQ Normalization TCGAutils TCGA
updated 2.8 years ago by ★ 4.9k • written 2.8 years ago by • 0
3
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4
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Error with R package curatedTCGAData while trying to download TCGA MultiAssayExperiments
MultiAssayExperiment curatedTCGAData TCGAutils
4.8 years ago svlachavas ▴ 840
3
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3
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1.6k
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Error in MAE experiment regarding the replacement of internal assays with different number of features
MultiAssayExperiment curatedTCGAData TCGAutils
updated 4.8 years ago by 700 • written 4.8 years ago by ▴ 840
3
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3
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1.8k
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Implementation of MultiAssayExperiment and curatedTCGAData R packages for quering and prosessing multi-omics cancer datasets
MultiAssayExperiment curatedTCGAData TCGAutils
updated 4.8 years ago by 700 • written 4.9 years ago by ▴ 840
5
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11
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5.4k
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Matching TCGA Aliquot ID to UUID or Barcode
TCGAutils TCGAbiolinks GenomicDataCommons
updated 6.2 years ago by 700 • written 6.2 years ago by ★ 1.6k
0
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1
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1.1k
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Breast cancer subtypes in TCGAutils
TCGAutils
updated 6.5 years ago by ★ 1.1k • written 6.5 years ago by • 0
3
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4
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1.9k
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TCGAutils: Error in .checkBarcodes(barcodes) : barcode delimiters not consistent
TCGAutils multiassayexperiment coad
updated 7.2 years ago by 700 • written 7.2 years ago by ▴ 160
8 results • Page 1 of 1
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Comment: Visualization of Functional Enrichment Result with enrichplot: How to control la by zhaoqiansun0592 • 0
Wow, this is super helpful! I always struggle with label sizes in enrichplot. Glad to see a solution using gginnards([Pasjans][1]) and ggre…
Comment: Could we detect difference at pathway level but not significant different at gen by zhaoqiansun0592 • 0
Interesting question! It's cool that ChatGPT4 gave such a helpful answer. I've also been wondering if pathways([space waves][1]) can show d…
Comment: Perform gene set enrichment analysis using fgsea on two conditions that don't ha by zhaoqiansun0592 • 0
Good to know there are workarounds for these tricky [doodle baseball][1]! Thanks for sharing the tips! [1]: https://doodle-baseball.cc/
Comment: GO.db and others package Download failure by James W. MacDonald 68k
Also, you never need to use anything but `BiocManager::install` to install any package, which has the beneficial side effect of ensuring th…
Comment: GO.db and others package Download failure by James W. MacDonald 68k
Yes. Your packages have odd Y version numbers (where the version is X.Y.Z). That means they are devel packages (release versions have even …
Votes
Comment: readDNAStringSet with non DNA characters
Comment: Guidance on limma for pseudobulk scRNA-seq with multi-factor design
Answer: Guidance on limma for pseudobulk scRNA-seq with multi-factor design
Answer: Guidance on limma for pseudobulk scRNA-seq with multi-factor design
Comment: Guidance on limma for pseudobulk scRNA-seq with multi-factor design
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