Bioconductor TCGAutils

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790

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normalization RNASEQ Normalization TCGAutils TCGA

updated 23 months ago by ATpoint ★ 4.5k • written 23 months ago by Deniz • 0

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2.1k

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MultiAssayExperiment curatedTCGAData TCGAutils

3.9 years ago svlachavas ▴ 830

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1.4k

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MultiAssayExperiment curatedTCGAData TCGAutils

updated 3.9 years ago by Marcel Ramos 700 • written 3.9 years ago by svlachavas ▴ 830

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1.5k

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MultiAssayExperiment curatedTCGAData TCGAutils

updated 3.9 years ago by Marcel Ramos 700 • written 4.1 years ago by svlachavas ▴ 830

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4.5k

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TCGAutils TCGAbiolinks GenomicDataCommons

updated 5.3 years ago by Marcel Ramos 700 • written 5.3 years ago by Dario Strbenac ★ 1.5k

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884

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TCGAutils

updated 5.6 years ago by Levi Waldron ★ 1.1k • written 5.6 years ago by vittorio.fortino • 0

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1.6k

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TCGAutils multiassayexperiment coad

updated 6.4 years ago by Marcel Ramos 700 • written 6.4 years ago by mario.zanfardino ▴ 160

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Comment: Problem at champ.load by icecreamlover • 0

Hello! Were you able to figure this out? I am running into the same error!

Comment: ChAMP - obtaining beta values using EPICv2 annotation by icecreamlover • 0

Hello, Were you able to fix the error? I used the same document and I am running into the same error. I am curious if you have any feedba…

Comment: BiomaRt Possible Ensembl SSL connectivity problems detected. by Adam • 0

Can this please be revisited and corrected ASAP? I'm encountering the same issue, using a slightly more modern version of R (4.1.0). It s…

Comment: Combining RNAseq and microarray data using edgeR/limma-voom by Adam Marstrand • 0

Thank you!

Comment: Combining RNAseq and microarray data using edgeR/limma-voom by Adam Marstrand • 0

Hi Gordon, Thanks for the answer! This makes a lot of sense. Your suggested pipeline (separate processing of datasets -> gene set analyses…

Votes

A: Up/Down Regulated GeneList from edgeR and R

A: Down/Up-regulated genes asymmetry in edgeR differential expression analysis

Answer: Combining RNAseq and microarray data using edgeR/limma-voom

Answer: How do I merge a list of GRanges?

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