Bioconductor TCGAutils

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742

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TCGAutils

updated 9 months ago by James W. MacDonald 68k • written 9 months ago by xiaofeiwang18266 ▴ 60

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1.1k

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normalization RNASEQ Normalization TCGAutils TCGA

updated 2.9 years ago by ATpoint ★ 5.0k • written 2.9 years ago by Deniz • 0

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2.5k

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MultiAssayExperiment curatedTCGAData TCGAutils

4.9 years ago svlachavas ▴ 840

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1.7k

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MultiAssayExperiment curatedTCGAData TCGAutils

updated 4.9 years ago by Marcel Ramos 700 • written 4.9 years ago by svlachavas ▴ 840

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1.9k

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MultiAssayExperiment curatedTCGAData TCGAutils

updated 4.9 years ago by Marcel Ramos 700 • written 5.0 years ago by svlachavas ▴ 840

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5.5k

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TCGAutils TCGAbiolinks GenomicDataCommons

updated 6.3 years ago by Marcel Ramos 700 • written 6.3 years ago by Dario Strbenac ★ 1.6k

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1.1k

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TCGAutils

updated 6.6 years ago by Levi Waldron ★ 1.1k • written 6.6 years ago by vittorio.fortino • 0

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1.9k

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TCGAutils multiassayexperiment coad

updated 7.3 years ago by Marcel Ramos 700 • written 7.4 years ago by mario.zanfardino ▴ 160

8 results • Page 1 of 1

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Comment: Bioconductor 3.22 Released! by residentialplayt • 0

Every run balances on the line between control and collapse. That where [Run3][1] lives on the razor thin edge of reaction, where hesitatio…

Comment: "Watched Tags" are being erased rather than updated by shepherl 4.2k

I can reproduce this and have opened an issue on the code base https://github.com/Bioconductor/support.bioconductor.org/issues/112

Comment: "Watched Tags" are being erased rather than updated by shepherl 4.2k

we can investigate this issue. thank you for bringing it to our attention

Comment: deseq2 filter the low counts by Michael Love 43k

> But within each comparison (contrast), if I trace some DEGs back to the original salmon merged gene counts (or even to normalised counts)…

Comment: deseq2 filter the low counts by empty_mt • 0

Thank you for you suggestion to look at the pre-filtering section in the DESeq2 vignettes - am I missing something? I have 6 treatments, …

Votes

Bioconductor 3.22 Released!

Comment: "Watched Tags" are being erased rather than updated

Comment: deseq2 filter the low counts

Answer: DESeq2 interactions

Answer: Important: Bioconductor Release 3.22 Delayed

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