Bioconductor TCGAutils

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TCGAutils

updated 11 months ago by James W. MacDonald 68k • written 11 months ago by xiaofeiwang18266 ▴ 60

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normalization RNASEQ Normalization TCGAutils TCGA

updated 3.0 years ago by ATpoint ★ 5.0k • written 3.0 years ago by Deniz • 0

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MultiAssayExperiment curatedTCGAData TCGAutils

5.0 years ago svlachavas ▴ 840

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MultiAssayExperiment curatedTCGAData TCGAutils

updated 5.0 years ago by Marcel Ramos 700 • written 5.0 years ago by svlachavas ▴ 840

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MultiAssayExperiment curatedTCGAData TCGAutils

updated 5.0 years ago by Marcel Ramos 700 • written 5.2 years ago by svlachavas ▴ 840

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TCGAutils TCGAbiolinks GenomicDataCommons

updated 6.4 years ago by Marcel Ramos 700 • written 6.4 years ago by Dario Strbenac ★ 1.6k

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TCGAutils

updated 6.7 years ago by Levi Waldron ★ 1.1k • written 6.7 years ago by vittorio.fortino • 0

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1.9k

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TCGAutils multiassayexperiment coad

updated 7.5 years ago by Marcel Ramos 700 • written 7.5 years ago by mario.zanfardino ▴ 160

8 results • Page 1 of 1

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Comment: Question about RE-agnostic mode for intact Hi-C and Micro-C normalization(HiCDCP by TikTsoksocissalpc • 0

Normalizing complex datasets like Hi C can be challenging, much like setting up a PC for optimal gaming performance. Just as careful tuning…

Comment: p.adjust BH Question by TikTsoksocissalpc • 0

Thanks for sharing your question about RMA limma analysis While working on your experiment, it s always helpful to have some background mu…

Answer: NUPOP usage by shepherl 4.2k

You should read the documentation in the package especially the package vignette https://bioconductor.org/packages/release/bioc/html/NuPoP.…

Comment: How can I correctly use phyloseq with Docker? by fnfgame • 0

In a rocker image, this error usually means the Bioconductor install happened as root but the runtime library paths used by the shiny user …

Comment: DECIPHER DesignProbes unable to design FISH-probes by Erik Wright ▴ 150

Are the sequences aligned (i.e., the same width) before running `TileSeqs()`?

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C: DESeq2 Following RSEM

Upcoming Ensembl API and data access changes - new blog post available

Comment: Highly similar RNA-seq samples in PCA - pooling or technical duplication?

Answer: Large logFC but somewhat high FDR

Comment: upstream git branches of bioc-release

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