Bioconductor Time-course

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486

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microarray normalization tscR time-course

updated 3.4 years ago by Kevin Blighe 3.9k • written 3.4 years ago by keremwai • 0

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654

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deseq2 time-serie time-course fold-change

updated 3.6 years ago by swbarnes2 ★ 1.3k • written 3.6 years ago by Victor Chano • 0

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566

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deseq2 design time-course

updated 4.5 years ago by Michael Love 41k • written 4.5 years ago by Victor Chano • 0

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1.2k

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deseq2 Time-course

updated 4.7 years ago by Michael Love 41k • written 4.7 years ago by h.valipour.k • 0

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1.8k

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deseq2 time-course

updated 5.5 years ago by Michael Love 41k • written 5.5 years ago by rbenel ▴ 30

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825

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masigpro covariates limma differential expression time-course

6.2 years ago veersingh.marwah • 0

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2.2k

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limma multiple time points time-course differential expression

updated 6.2 years ago by Aaron Lun ★ 28k • written 6.3 years ago by Jake • 0

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1.9k

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rnaseq deseq2 time-course

updated 6.4 years ago by Gavin Kelly ▴ 670 • written 6.4 years ago by inzirio ▴ 10

8 results • Page 1 of 1

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Comment: Small RNA-seq Analysis DESEQ2 : Unexpected Significance by samer • 0

This is the result i got when i only looked on day 04 for the gene in example 1 posted above dds_sub <- dds[, dds$date %in% c("day04"…

Answer: What is the meaning of "CpG interrogation" and "single nucleotide extension(SBE) by James W. MacDonald 64k

There are two types of probes used by Illumina. The type I probes bind directly to the CpG site and have two different probes (one for a me…

Comment: Small RNA-seq Analysis DESEQ2 : Unexpected Significance by Michael Love 41k

Then for the remaining genes that you don't think are DE, just plot like this: ``` dds_sub <- dds[,dds$condition %in% c("x","y")] dropleve…

Comment: Small RNA-seq Analysis DESEQ2 : Unexpected Significance by samer • 0

yes i turned it off @mikelove

Answer: autonomics: example("read_somascan", package = "autonomics") fails, but not on B by Mike Smith ★ 6.2k

It looks like `autonomics` uses `BiocFileCache` to create a local copy of the data and save repeat downloading. Given the (relatively) rec…

Votes

Answer: What is the meaning of "CpG interrogation" and "single nucleotide extension(SBE)

Answer: WGCNA documentation not available

Comment: Can the limma package be applied to Log2 RUV-normalized data?

Answer: Correct the batch effect in methylation analysis in R

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