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Time-course
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2
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8
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2.5k
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Limma for differential expression in a time-course
limma
multiple time points
time-course
differential expression
updated 6.7 years ago by
Aaron Lun
★ 28k • written 6.7 years ago by
Jake
• 0
1
vote
7
replies
2.0k
views
Visualization for Time Course "LRT" test in DESeq2
deseq2
time-course
updated 5.9 years ago by
Michael Love
42k • written 5.9 years ago by
rbenel
▴ 40
1
vote
3
replies
2.0k
views
[DESeq2] time-course Experimental design
rnaseq
deseq2
time-course
updated 6.8 years ago by
Gavin Kelly
▴ 680 • written 6.8 years ago by
inzirio
▴ 10
2
votes
3
replies
1.4k
views
Three-factor design with DESeq2
deseq2
Time-course
updated 5.1 years ago by
Michael Love
42k • written 5.1 years ago by
h.valipour.k
• 0
0
votes
0
replies
943
views
How to specify covariates in maSigPro analysis (like limma)
masigpro
covariates
limma
differential expression
time-course
6.6 years ago
veersingh.marwah
• 0
1
vote
2
replies
810
views
Time-series analysis with control and treated samples, and Fold Change extraction in DESeq2
deseq2
time-serie
time-course
fold-change
updated 4.1 years ago by
swbarnes2
★ 1.4k • written 4.1 years ago by
Victor Chano
• 0
0
votes
1
reply
639
views
DESeq2 analysis of multifactorial RNAseq experiment
deseq2
design
time-course
updated 4.9 years ago by
Michael Love
42k • written 4.9 years ago by
Victor Chano
• 0
0
votes
1
reply
582
views
Input of tscR
microarray
normalization
tscR
time-course
updated 3.8 years ago by
Kevin Blighe
★ 3.9k • written 3.8 years ago by
keremwai
• 0
8 results • Page
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Comment: deseq2 results
by
swbarnes2
★ 1.4k
Ask the people who made the libraires if there was anything unusual in the QC of the outlier sample. Try to figure out what biologically …
Comment: Can't post a question containing code?
by
NATASHA
• 0
did you find a solution? I´m having the same problem
Comment: error
by
NATASHA
• 0
Please ignore, i didnt copy all the scrip
Comment: Extremely small p-values using Limma for proteomic data
by
James W. MacDonald
65k
If you ever find yourself using the `@` function, you should reconsider what you are doing. There are vanishingly small instances when an e…
Comment: How to use bootRanges to bootstrap small RNA loci (nullranges package)
by
Michael Love
42k
Here is some example code <https://gist.github.com/mikelove/cbbc84634b6854c865cb5eb08ad9b245>
Votes
A: AIC-like measure for DESeq2
Comment: Extremely small p-values using Limma for proteomic data
Comment: Log-cpm values from limma
Comment: Log-cpm values from limma
Comment: deseq2 results
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