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How to run the annotation tool for GARFIELD v2: garfield_annotate_uk10k.sh
garfield
awk
unix
shell
embl-ebi
updated 3.1 years ago by
bk11
• 0 • written 5.1 years ago by
rodrigo.duarte88
▴ 30
3
votes
3
replies
1.7k
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Issue with scp transfer of DESeq2 objects
deseq2
scp
Unix
Single-Cell
updated 4.4 years ago by
Martin Morgan
25k • written 4.4 years ago by
vincent.croset
▴ 20
0
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0
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1.0k
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run KEGGprofile sofware on UNIX server
keggprofile
UNIX
error exit
9.4 years ago
gregory voisin
▴ 430
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Comment: Although I successfully installed the package "simpleaffy'' , I cannot library i
by
fatinataly
• 0
I tried also with oligo does not work, any other suggestion?
Comment: More regions in union when increasing DBA$config$mergeOverlap
by
Ian D.
▴ 70
Hello. Thanks for the reply. Sorry about this. My testing is telling me that 1 is the default (a gap), not -1 (1bp overlap). Negative …
Comment: Differences in differential analysis methods for RNA-Seq
by
ATpoint
★ 4.1k
> I am just re-processing due to being uncertain about how they used the edgeR analysis to reach gene level edgeR devs published something…
Comment: Differences in differential analysis methods for RNA-Seq
by
james.zhang20
• 0
Thanks for the explanations, it has helped clarify some things. Unfortunately, I am working from an early access public dataset (https://do…
Answer: Deseq2 and Normalization of RNA sequencing data
by
ATpoint
★ 4.1k
There is no expectation of normality that is realistic in terms of expression level. Levels are widely different between genes, and counts …
Votes
A: Error in DESeqDataSet : some values in assay are not integers
Bioconductor 3.19 is Released!
Bioconductor 3.19 is Released!
Answer: DEseq2 coefficient
SPIA plotP giving error
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