Log In
Sign Up
about
faq
Ask a question
Latest
News
Jobs
Tutorials
Tags
Users
New Post
Latest
News
Jobs
Tutorials
Tags
Users
Log In
Sign Up
About
Limit
all time
today
this week
this month
this year
Unanswered
All posts
Sort
Update
Answers
Bookmarks
Creation
Replies
Rank
Views
Votes
Showing :
Single-Cell
•
reset
3
votes
2
replies
853
views
BiocParallel errors from muscat
BiocParallel
muscat
single-cell
18 months ago
tangming2005
▴ 190
0
votes
0
replies
523
views
Job:
PhD student position: Vertebrate brain origins and evolution
PhD
single-cell
ComparativeGenomics
evolution
23 months ago
henrik.kaessmann
• 0
0
votes
0
replies
518
views
Job:
Bioinformatics postdoc in comparative genomics
single-cell
evolution
Genomics
Postdoc
23 months ago
henrik.kaessmann
• 0
0
votes
0
replies
579
views
Job:
Job: Moderna Statistical genomics co-op 2022, single-cell applications in immunology, masters or PhDs
co-op
immunology
single-cell
omics
2.0 years ago
joyce.hsiao1
• 0
0
votes
0
replies
682
views
Job:
Computational Biologist, Blood Research Institute, Versiti, Wauwatosa, Wisconsin, USA
RNA-seq
Job
Single-Cell
2.3 years ago
rbrns
• 0
7
votes
3
replies
1.0k
views
Effect of feature number on adjusted p-values
edgeR
DESeq2
single-cell
scRNAseq
zinbwave
updated 2.4 years ago by
Aaron Lun
★ 28k • written 2.4 years ago by
vincent.croset
▴ 20
1
vote
2
replies
673
views
question for "Chapter 24 Zeisel mouse brain (STRT-Seq) in single-cell"
STRT-Seq
single-cell
tutorial
updated 3.2 years ago by
Aaron Lun
★ 28k • written 3.2 years ago by
tiphaine.martin
• 0
3
votes
3
replies
1.5k
views
Issue with scp transfer of DESeq2 objects
deseq2
scp
Unix
Single-Cell
updated 3.8 years ago by
Martin Morgan
25k • written 3.8 years ago by
vincent.croset
▴ 20
5
votes
6
replies
2.6k
views
How to build and map to a "pre-mRNA" reference transcriptome for single nucleus RNA-seq data?
tximeta
ensembldb
single-cell
snRNA-seq
tximport
updated 4.0 years ago by
Robert Castelo
★ 3.0k • written 4.0 years ago by
Stephanie Hicks
▴ 80
0
votes
1
reply
888
views
Scran: Performing DE after cell-typle identifaction on the corrected and integrated datasets
Scran
MNN_correct
Differential expression
single-cell
4.5 years ago
baldissera152
• 0
7
votes
12
replies
6.1k
views
How to identify real cells in 10X RNA-seq ?
single-cell
10X
Cell calling
DropletUtils
cellranger
updated 4.5 years ago by
Aaron Lun
★ 28k • written 4.5 years ago by
xingxd16
▴ 20
0
votes
0
replies
685
views
Job:
Biostatistics Analyst II - high throughput single-cell assays
biostatistics
single-cell
high throughput
Job
4.6 years ago
careers
• 0
3
votes
0
replies
963
views
Job:
Postdoctoral Scientist position at intersection of Single-Cell Cancer Genomics, Data Science and Bioconductor Software Development
job
single-cell
data science
cancer
genomics
Job
4.7 years ago
Stephanie Hicks
▴ 80
2
votes
2
replies
1.5k
views
[MnnCorrect] Remove batch effects but keep condition effects
single-cell
scran
mnncorrect
rnaseq
updated 4.8 years ago by
Aaron Lun
★ 28k • written 4.8 years ago by
John Reid
▴ 10
1
vote
0
replies
748
views
Job:
applied methods development for single-cell sequencing
single-cell
job
computational biology
Job
4.8 years ago
Simon Anders
★ 3.7k
3
votes
2
replies
1.4k
views
Seurat to SingleCellExperiment Converting error in MAC
singlecellexperiment
single-cell
rnaseq
updated 4.9 years ago by
Steve Lianoglou
13k • written 4.9 years ago by
hamza_karakurt
▴ 50
0
votes
0
replies
824
views
Job:
PhD opportunity in Heidelberg for computational people
PhD position
job
single-cell
Job
4.9 years ago
Simon Anders
★ 3.7k
1
vote
5
replies
2.1k
views
newSCESet and SingleCellExperiment basic differences and TMM Normalization
singlecellexperiment
single-cell
rnaseq
seurat
scater
5.0 years ago
hamza_karakurt
▴ 50
1
vote
1
reply
1.1k
views
Problem with finding mitochondrial genes in a human single cell RNA-Seq readCounts file
single-cell
rnaseq
mitochondria
updated 5.1 years ago by
Aaron Lun
★ 28k • written 5.1 years ago by
es.azadian
• 0
0
votes
3
replies
756
views
Error of makeTechTrend() of Scran
scran
single-cell
seq.default
updated 5.1 years ago by
Aaron Lun
★ 28k • written 5.1 years ago by
Guangshuai Jia
• 0
1
vote
1
reply
1.2k
views
Adjust number of clusters with scran/buildSNNGraph
scran
buildsnngraph
cluster_walktrap
single-cell
updated 5.2 years ago by
Aaron Lun
★ 28k • written 5.2 years ago by
tobi
• 0
3
votes
3
replies
6.5k
views
rowSums() rowMeans() don't work on sparse matrix "dgCMatrix"
scater
scran
single-cell
updated 5.2 years ago by
Martin Morgan
25k • written 5.4 years ago by
MengChun Tseng
▴ 10
2
votes
1
reply
1.9k
views
MAST: testing differential expression with a nested factorial design
MAST
single-cell
rna-seq
updated 5.4 years ago by
Andrew_McDavid
▴ 270 • written 5.5 years ago by
khandarius
▴ 20
0
votes
4
replies
4.4k
views
Change point size and remove outline in scater's plotPCA
scater
rnaseq
single-cell
updated 5.5 years ago by
angela.ubn
• 0 • written 6.4 years ago by
CodeAway
▴ 70
0
votes
28
replies
2.5k
views
Job:
Postdoc on integrating and analyzing new transcriptome types in the Bgee database
rnaseq
data integration
single-cell
pacbio
across species
Job
5.5 years ago
bgee
• 0
1
vote
3
replies
1.1k
views
Differential expressiong with two groups in BASiCS
BASiCS
single-cell
bayesian
differential expression
updated 5.6 years ago by
CataVallejos
▴ 10 • written 5.6 years ago by
muad.abdelhay
▴ 10
4
votes
3
replies
1.5k
views
single-cells RNA-seq analysis by MAST with unbalanced group size
mast
single-cell
rna-seq
differential analysis
updated 5.7 years ago by
Andrew_McDavid
▴ 270 • written 5.7 years ago by
shao
▴ 100
4
votes
5
replies
1.5k
views
SC3 gene clusters
SC3
single cell
single-cell
Tutorial
updated 5.9 years ago by
Martin Morgan
25k • written 5.9 years ago by
ahmed.elewa
▴ 20
3
votes
3
replies
2.0k
views
How do you test a contrast in MAST?
MAST
single-cell
differential gene expression
updated 6.0 years ago by
Andrew_McDavid
▴ 270 • written 6.0 years ago by
Shian Su
▴ 40
5
votes
6
replies
2.3k
views
Error when merging SCESet objects
scater
single-cell
updated 6.0 years ago by
Aaron Lun
★ 28k • written 6.0 years ago by
nlehmann
▴ 20
1
vote
1
reply
1.3k
views
Does SC3 correct counts for gene length?
sc3
scater
single-cell
rna-seq
biclustering
updated 6.1 years ago by
Vladimir Kiselev
▴ 150 • written 6.1 years ago by
rmf
▴ 20
2
votes
3
replies
1.1k
views
Scran functions not found
single-cell
scran
updated 6.1 years ago by
Aaron Lun
★ 28k • written 6.1 years ago by
alva.james
• 0
2
votes
9
replies
2.2k
views
Zero inflation in RUV normalization and DE for single cell data
ruv
ruvseq
ruvnormalize
single-cell
zero-inflated
updated 6.1 years ago by
davide risso
▴ 920 • written 6.1 years ago by
Nik Tuzov
▴ 80
1
vote
0
replies
2.7k
views
Tutorial:
BoF Bioc2017: Infrastructure for efficient storage and processing of large-scale single-cell genomics data
single-cell
objectstorage
Tutorial
6.1 years ago
shepherl
3.5k
0
votes
5
replies
2.0k
views
[MnnCorrect] In case of known subpopulations
scran
single-cell
mnncorrect
rnaseq
6.2 years ago
Jens Preussner
▴ 30
4
votes
2
replies
1.2k
views
sc3_plot_expression, colour labels
sc3
single-cell
updated 6.3 years ago by
Vladimir Kiselev
▴ 150 • written 6.3 years ago by
cfustero
▴ 20
3
votes
3
replies
1.1k
views
Sharing SC3_interactive results
SC3
single-cell
shiny
updated 6.4 years ago by
Vladimir Kiselev
▴ 150 • written 6.4 years ago by
cfustero
▴ 20
0
votes
0
replies
896
views
Rstudio crashes when running monocole
monocole
single-cell
rstudio
6.4 years ago
Assa Yeroslaviz
★ 1.5k
2
votes
5
replies
1.7k
views
sc3_prepare function error
sc3
scater
single-cell
single cell
updated 6.6 years ago by
Vladimir Kiselev
▴ 150 • written 6.6 years ago by
Assa Yeroslaviz
★ 1.5k
3
votes
6
replies
3.2k
views
How to properly normalize a single-cell sparse matrix?
Dropseq
single-cell
normalization
sparse
updated 7.0 years ago by
Aaron Lun
★ 28k • written 7.0 years ago by
ssabri
▴ 20
0
votes
0
replies
1.7k
views
News:
Workshop on Statistical Challenges in Single-Cell Biology, April 30 to May 5, 2017, at Villa Monte Verita, Ascona
workshop
statistics
single-cell
News
7.1 years ago
Wolfgang Huber
13k
0
votes
0
replies
1.8k
views
Job:
Two Postdoc Positions in Evolutionary Single-Cell Genomics (experimental and computational)
evolution
single-cell
development
differentiation
cool
Job
7.2 years ago
Wolfgang Huber
13k
42 results • Page
1 of 1
Recent ...
Replies
Comment: DMRcate design
by
James W. MacDonald
63k
That's what identical context means.
Comment: DMRcate design
by
Jitendra
▴ 10
Thanks James, but I did not understand it clearly. Could I used same Limma design matrix for DMRcate?
Comment: Steps needed to change design (relevel factors) in DESeq2
by
jd774
• 0
Thanks for the example code, would the `"condition_1_vs_2"` and `"condition_2_vs_1"` giving same or different results on DEGs and normalize…
Answer: heatmap.2 - change column & row locations; angle / rotate
by
nehagoyal6397
• 0
Window 10 are comes with the new updates [how to fix connections to wireless displays in windows 10](http://fixwindows10connections.com) ju…
Comment: filtering out lowly expressed genes by groups
by
James W. MacDonald
63k
You might want to filter first though. ``` fun <- function(deseqobj, contvec, cutoff) { lildds <- dds[rowMeans(assays(deseqobj…
Votes
Bioconductor 3.18 db0s, OrgDbs, and TxDbs now available
Comment: Timely differentially expressed genes
Comment: NPARC package y-variable
Comment: List of Deprecated Packages for Bioc3.18
Answer: Manual creation of qPCRset does not work
Awards
• All
Popular Question
to
Hervé Pagès
16k
Popular Question
to
Vincent J. Carey, Jr.
6.7k
Popular Question
to
sohail.mbio
▴ 10
Popular Question
to
komal.rathi
▴ 110
Popular Question
to
Levi Waldron
1.1k
Locations
• All
Republic of Ireland,
1 minute ago
United States,
3 minutes ago
United States,
1 hour ago
India,
1 hour ago
United States,
2 hours ago
Traffic: 478 users visited in the last hour
Content
Search
Users
Tags
Badges
Help
About
FAQ
Access
RSS
API
Stats
Use of this site constitutes acceptance of our
User Agreement and Privacy Policy
.
Powered by the
version 2.3.6