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votes

1.9k

views

limma voom

updated 10.4 years ago by Aaron Lun ★ 29k • written 10.4 years ago by ea1402 ▴ 20

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7.0k

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edger voom limma

10.5 years ago dongamit123 ▴ 20

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3.1k

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limma voom differential gene expression

updated 10.5 years ago by Gordon Smyth 53k • written 10.5 years ago by ankur.chakravarthy.10 ▴ 40

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5.3k

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voom limma clustering removebatcheffect() batch effect

updated 10.5 years ago by Gordon Smyth 53k • written 10.5 years ago by ale.breschi ▴ 10

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replies

19k

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limma voom

updated 10.7 years ago by Gordon Smyth 53k • written 11.6 years ago by John Blischak ▴ 190

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replies

4.2k

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voom pca

updated 10.8 years ago by Aaron Lun ★ 29k • written 10.8 years ago by Merienne Nicolas ▴ 120

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4.0k

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limma voom contrast

updated 10.8 years ago by Steve Lianoglou ★ 13k • written 10.8 years ago by Stijn van Dongen ▴ 80

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2.7k

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limma voom rnaseq

updated 10.8 years ago by Gordon Smyth 53k • written 10.8 years ago by Lorena Pantano ▴ 140

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4.7k

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limma voom sva edgeR

updated 10.9 years ago by Matthew Ritchie ▴ 1000 • written 10.9 years ago by m.fletcher ▴ 20

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3.9k

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limma voom linear model

updated 10.9 years ago by James W. MacDonald 68k • written 10.9 years ago by Francesco Gatto ▴ 20

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8.6k

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limma voom proteomics spectral counts massspectrometry

updated 11.0 years ago by Gordon Smyth 53k • written 11.0 years ago by Ben Neely ▴ 40

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7.9k

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limma rnaseq differential expression voom

updated 11.0 years ago by Alyssa Frazee ▴ 210 • written 11.0 years ago by François Lefebvre ▴ 50

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3.7k

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limma voom

11.0 years ago Ninni Nahm ▴ 50

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6.3k

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voom TCGA RNAseq

11.1 years ago paola.ostano ▴ 10

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4.1k

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limma voom

updated 11.2 years ago by Aaron Lun ★ 29k • written 11.2 years ago by artvandelay ▴ 10

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replies

11k

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limma rnaseq geneexpression voom counts

updated 11.2 years ago by Steve Lianoglou ★ 13k • written 11.2 years ago by Peter Crisp ▴ 10

166 results • Page 4 of 4

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Comment: Ensembl plants at annotationHub? by jwp48 • 0

Nope I don't mind haha! Anyway thanks so much! Thats super kind of you!

Answer: Combining two proteomics datasets with limpa by Gordon Smyth 53k

Hi Andrew, We don't have that much experience combining different datasets with limpa yet, but my feeling is that the same DPC should be u…

Comment: Guitar R package requires update due to dependency GenomicFeatures by ferran.llobet.cabau ▴ 10

Thank you @seandavi for your feedback. I followed your recommendations and generated a [pull request][1] including the fix for this issue…

Comment: Ensembl plants at annotationHub? by Guido Hooiveld ★ 4.1k

Hope you don't mind I am not Johannes... ;-) Note that you nowadays can generate these yourselves using the `docker` image Johannes made av…

Comment: How does contrasts.fit do in limma to extract comparisons with a model having in by jtsy6383 • 0

Thanks for the reminder about DiffVar (for that project I ended up using GAMLSS in the end and haven't touched DiffVar since) and the alter…

Votes

A: What is logFC and "B" in methylation analysis ??

limma moderated t-statistics and B-statistics

Comment: Guitar R package requires update due to dependency GenomicFeatures

A: how to control age and gender effect in expression data using DESeq2

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