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Comment: Small RNA-seq Analysis DESEQ2 : Unexpected Significance
by
samer
•
0
and sometimes in other count plots we observe a difference between the counts of the 2 conditions (ON/OFF) where it should be significant b…
Comment: Small RNA-seq Analysis DESEQ2 : Unexpected Significance
by
ATpoint
★
3.6k
What is `Log2 Counts + 1`? Please show code for the plots. And please remove the comments and move everything to the toplevel question usin…
Comment: Small RNA-seq Analysis DESEQ2 : Unexpected Significance
by
samer
•
0
However, when examining the count plots, I've observed a frequent occurrence of significant adjusted p-values between conditions particular…
Comment: Can the limma package be applied to Log2 RUV-normalized data?
by
Shaimaa Gamal
•
0
I see. Do you recommend a certain method to get norm.factors through calcNormFactors function espcially if the downstream analysis includes…
Comment: Can the limma package be applied to Log2 RUV-normalized data?
by
Gordon Smyth
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515 samples is certainly large enough.
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