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massspectrometry
•
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0
votes
4
replies
359
views
How to analyse RNA-based protein pulldown mass spectrometry data
Proteomics
limma
MassSpectrometry
10 months ago
barrypraveen
• 0
1
vote
2
replies
386
views
calculate theoretical isotope distribution give the AA sequence
Metabolomics
proteomics
MassSpectrometry
17 months ago
Oliver
• 0
0
votes
3
replies
385
views
Why I can not install rTANDEM?
MassSpectrometry
Proteomics
mzR
17 months ago
Gilad
• 0
2
votes
2
replies
2.0k
views
Thermo Xcalibur RAW data to MGF
mass spectrometry
massspectrometry
updated 4.0 years ago by
Laurent Gatto
1.5k • written 4.0 years ago by
hwu12
▴ 10
0
votes
1
reply
789
views
Metabolite identification package
xcms
massspectrometry
metabolomics
updated 4.1 years ago by
Johannes Rainer
★ 1.9k • written 4.1 years ago by
johnhamre3
• 0
0
votes
4
replies
901
views
Cannot install and load MSstats package
proteomics
massspectrometry
msstats
updated 4.1 years ago by
Laurent Gatto
1.5k • written 4.1 years ago by
zz298
• 0
2
votes
3
replies
1.0k
views
Imputation method selection (mass spectrometry) bimodal distribution
impute
missing value imputation
DEP
massspectrometry
updated 4.5 years ago by
Laurent Gatto
1.5k • written 4.5 years ago by
serpalma.v
▴ 60
1
vote
3
replies
1.8k
views
XCMS2 on MSMS data
xcms
metabolomics
massspectrometry
lipidomics
bioconductor
6.3 years ago
Titan
• 0
0
votes
3
replies
1.4k
views
Problem with XCMS
xcms
metabolomics
lipidomics
proteomics
massspectrometry
6.3 years ago
Titan
• 0
0
votes
0
replies
1.1k
views
News:
4 days left to register for a short course on computational proteomics
proteomics
news
course
massspectrometry
News
7.2 years ago
Olga Vitek
▴ 40
0
votes
0
replies
935
views
Job:
Research Data Technician, Cambridge, UK
proteomics
massspectrometry
Job
7.3 years ago
Laurent Gatto
1.5k
25
votes
9
replies
4.9k
views
voom for spectral counts
limma
voom
proteomics
spectral counts
massspectrometry
updated 7.3 years ago by
Gordon Smyth
45k • written 7.3 years ago by
Ben Neely
▴ 40
2
votes
1
reply
1.2k
views
News:
Announcing a short course in computational and statistical proteomics
proteomics
massspectrometry
R
News
7.3 years ago
vitek.olga
▴ 20
0
votes
1
reply
996
views
A package to analyse Quantitative proteomics study
massspectrometry
updated 7.5 years ago by
Laurent Gatto
1.5k • written 7.5 years ago by
Roopa Subbaiaih
▴ 130
1
vote
2
replies
1.5k
views
Problem with openMSfile in mzR
massspectrometry
7.5 years ago
meilan23
• 0
0
votes
1
reply
1.1k
views
Mass Spectrometry data analysis
MassSpectrometry
PRIDE
updated 7.6 years ago by
Laurent Gatto
1.5k • written 7.6 years ago by
paulamirini2008
• 0
16 results • Page
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Answer: Using featureCounts and downloading Rsubread
by
James W. MacDonald
59k
You need to tell `BiocManager;;install` that you want to install the `Rsubread` package. ``` BiocManager::install("Rsubread") library(…
Comment: featureCounts: 0% successfully assigned fragments
by
KMS
• 0
Dear ATpoint I am exactly looking for read/gene count from BAM/SAM file either through ht-seq or feature count feature count giving me 0% s…
Answer: Get MANE transcripts from TxDb.Hsapiens.UCSC.hg38.knownGene
by
James W. MacDonald
59k
There is the ncbiRefSeqSelect table that has the MANE and RefSeq Select transcripts. It's not just the MANE though. ``` > z <- makeTxDb…
Comment: Handling of missing values in limma
by
AyHi
• 0
Thank you, Gordon, for your reply. I used sum(is.na(lmfit)) after lmFit, but somewhat it indicated there was no NA observations even when…
Comment: merging VCF files
by
lesefo6448
• 0
You can use this VCF Merger Software if you want to Merge VCF files into one file. this Software easily Merge your multiple VCF files with…
Votes
Answer: Load packages when using BatchtoolsParam
Comment: Load packages when using BatchtoolsParam
Answer: edgeR: the F-statistics changed after removing lowly expressed gene
Answer: edgeR: the F-statistics changed after removing lowly expressed gene
A: DESeq2: thousands of NA for pvalues?
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