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Bioconductor 2.14 is released
BiocViews
aCGH
SNP
Sequencing
RNASeq
ChIPSeq
miRNA
Microarray
qPCR
Metabolomics
Coverage
10.1 years ago
Dan Tenenbaum
★ 8.2k
0
votes
0
replies
4.0k
views
Bioconductor 2.13 is released
BiocViews
aCGH
SNP
Transcription
Sequencing
miRNA
Microarray
Genetics
Proteomics
Coverage
10.6 years ago
Dan Tenenbaum
★ 8.2k
0
votes
2
replies
3.8k
views
Bioconductor 2.12 is released
BiocViews
aCGH
SNP
Transcription
Sequencing
Microarray
Coverage
Alignment
Annotation
GO
updated 8.8 years ago by
marksteve952
• 0 • written 11.1 years ago by
Dan Tenenbaum
★ 8.2k
0
votes
0
replies
2.4k
views
8. CGHCall problems (Bernard North [guest]) : Bioconductor Digest, Vol 126, Issue 7
aCGH
RNASeq
ChIPSeq
Proteomics
Annotation
Normalization
GO
Network
Cancer
ChipName
probe
10.7 years ago
Sarah JugurnauthLittle
▴ 20
0
votes
1
reply
2.0k
views
Entrez Gene ID to Probe Set Name
aCGH
Sequencing
miRNA
Microarray
Annotation
Normalization
GO
Preprocessing
Visualization
updated 15.5 years ago by
Marc Carlson
★ 7.2k • written 15.5 years ago by
McGee, Monnie
▴ 300
0
votes
0
replies
1.7k
views
getGEO problem
aCGH
gpls
aCGH
GEOquery
cycle
aCGH
gpls
aCGH
GEOquery
cycle
14.2 years ago
Sean Davis
21k
0
votes
1
reply
1.6k
views
how to import Agilent CGH custom design xml file into limma
aCGH
CGH
probe
aCGH
snapCGH
aCGH
CGH
probe
aCGH
snapCGH
updated 13.5 years ago by
Sean Davis
21k • written 13.5 years ago by
Jarek Bryk
▴ 110
0
votes
3
replies
1.6k
views
Bioconductor 2.3 is released
aCGH
Sequencing
miRNA
Microarray
Visualization
Bayesian
Classification
Survival
Yeast
LPE
15.5 years ago
Patrick Aboyoun
★ 1.6k
0
votes
6
replies
1.6k
views
ANN: Bioconductor Release 1.7 is available
aCGH
Microarray
Annotation
Classification
annotate
edd
hexbin
SAGElyzer
Rgraphviz
RMAGEML
updated 18.6 years ago by
Norman Pavelka
▴ 190 • written 18.6 years ago by
Seth Falcon
★ 7.4k
0
votes
0
replies
1.5k
views
seeking advice on analyzing CGH data
aCGH
CGH
aCGH
aCGH
CGH
aCGH
13.5 years ago
Paul Shannon
★ 1.1k
0
votes
3
replies
1.5k
views
Circular binary segmentation for allele-specific CN data
aCGH
aCGH
aCGH
aCGH
updated 13.7 years ago by
Oosting, J. PATH
▴ 550 • written 13.7 years ago by
Christine Ho
▴ 20
0
votes
4
replies
1.5k
views
snapCGH fails in runBioHMM
aCGH
Microarray
TwoChannel
Cancer
limma
aCGH
snapCGH
aCGH
Microarray
TwoChannel
Cancer
updated 15.0 years ago by
Wolfgang Raffelsberger
▴ 160 • written 15.0 years ago by
Ramon Diaz
★ 1.1k
0
votes
4
replies
1.4k
views
running time of snapCGH processCGH and runDNAcopy
aCGH
Survival
CGH
annotate
genefilter
affy
DNAcopy
aCGH
GLAD
tilingArray
snapCGH
aCGH
updated 16.6 years ago by
jhs1jjm@leeds.ac.uk
▴ 230 • written 16.6 years ago by
caiwei@mdanderson.org
▴ 110
0
votes
0
replies
1.4k
views
Problem installing rmutil/repeated
aCGH
aCGH
aCGH
aCGH
18.8 years ago
J-C. Marioni
▴ 30
0
votes
0
replies
1.4k
views
Bioconductor 2.7 is released
BiocViews
aCGH
Transcription
RNASeq
miRNA
Microarray
Normalization
Network
Bayesian
aCGH
13.6 years ago
Martin Morgan
25k
0
votes
0
replies
1.3k
views
Problems with aCGH package
aCGH
Genetics
Cancer
CGH
impute
aCGH
aCGH
Genetics
Cancer
CGH
impute
aCGH
19.9 years ago
grischa tödt
▴ 30
0
votes
4
replies
1.3k
views
Problem in reading JPEG files for CGH arrays
aCGH
Genetics
aCGH
GLAD
aCGH
Genetics
aCGH
GLAD
updated 15.3 years ago by
Sean Davis
21k • written 15.3 years ago by
Alberto Goldoni
▴ 360
0
votes
1
reply
1.3k
views
snapCGH; export results of summarize.clones() function from aCGH
aCGH
Survival
Cancer
Breast
Biobase
annotate
genefilter
geneplotter
multtest
limma
aCGH
16.9 years ago
Steven McKinney
▴ 310
0
votes
2
replies
1.3k
views
GEOmetadb query
aCGH
GO
aCGH
GEOmetadb
aCGH
GO
aCGH
GEOmetadb
updated 14.3 years ago by
Jack Zhu
▴ 170 • written 14.3 years ago by
BorisZybailov@gmail.com
▴ 10
0
votes
0
replies
1.3k
views
Bioconductor 1.8 for R 2.3.0 is released!
BiocViews
aCGH
SNP
Microarray
Annotation
GO
Clustering
Cancer
Yeast
cdf
probe
RMAGEML
18.0 years ago
Seth Falcon
★ 7.4k
0
votes
1
reply
1.3k
views
Workflow for Agilent aCGH anlysis
aCGH
aCGH
aCGH
aCGH
updated 11.5 years ago by
Steve Lianoglou
★ 13k • written 11.5 years ago by
McQueen, Cole
▴ 10
0
votes
0
replies
1.3k
views
agilent aCGH analysis
aCGH
aCGH
aCGH
aCGH
11.8 years ago
Guest User
★ 13k
0
votes
0
replies
1.2k
views
Bioconductor training course, Boston March 5-6-7 2008
aCGH
SNP
Genetics
Annotation
GO
Visualization
affy
limma
aCGH
MLInterfaces
Category
SNP
16.3 years ago
Vincent J. Carey, Jr.
6.7k
0
votes
2
replies
1.2k
views
Chromosome 23 and 24 dropped after run snapCGH processCGH
aCGH
Survival
Cancer
annotate
genefilter
affy
DNAcopy
aCGH
GLAD
tilingArray
snapCGH
updated 16.6 years ago by
J-C. Marioni
▴ 40 • written 16.6 years ago by
caiwei@mdanderson.org
▴ 110
0
votes
0
replies
1.2k
views
CGHCall problems
aCGH
probe
DNAcopy
aCGH
CGHcall
aCGH
probe
DNAcopy
aCGH
CGHcall
10.8 years ago
Guest User
★ 13k
0
votes
1
reply
1.2k
views
Imputation problem in aCGH
aCGH
Biobase
multtest
impute
aCGH
aCGH
Biobase
multtest
impute
aCGH
16.8 years ago
Benjamin Otto
▴ 830
0
votes
2
replies
1.2k
views
CGH-like workflow for Affymetrix SNP 500k
aCGH
SNP
Cancer
DNAcopy
aCGH
aCGH
SNP
Cancer
DNAcopy
aCGH
updated 15.9 years ago by
Henrik Bengtsson
★ 2.4k • written 15.9 years ago by
Daniel Brewer
★ 1.9k
0
votes
2
replies
1.2k
views
CGHcall error
aCGH
Normalization
Cancer
aCGH
CGHcall
copynumber
aCGH
Normalization
Cancer
aCGH
CGHcall
updated 15.6 years ago by
Daniel Rico
▴ 110 • written 15.6 years ago by
James Morris
▴ 40
0
votes
2
replies
1.2k
views
imputing missing data for 70mer array platform, need advice
aCGH
CGH
multtest
impute
aCGH
oligo
aCGH
CGH
multtest
impute
aCGH
oligo
updated 17.3 years ago by
Sean Davis
21k • written 17.3 years ago by
Betty Gilbert
▴ 50
0
votes
0
replies
1.2k
views
readPositionalInfo in snapCGH for preparing CNA files for DNAcopy
aCGH
DNAcopy
aCGH
snapCGH
aCGH
DNAcopy
aCGH
snapCGH
10.8 years ago
Guest User
★ 13k
0
votes
0
replies
1.2k
views
Using aCGH library on Affymetrix Cytogenetics 2.7M microarray data
aCGH
SNP
PROcess
aCGH
aCGH
SNP
PROcess
aCGH
11.5 years ago
Guest User
★ 13k
0
votes
0
replies
1.2k
views
flagging spots in marray
aCGH
Microarray
Normalization
GO
Cancer
Biobase
annotate
genefilter
affy
affydata
limma
17.3 years ago
Gordon Smyth
50k
0
votes
3
replies
1.2k
views
Call for comments on analyzing aCGH data with huge number of probes on a single chromosome
aCGH
aCGH
aCGH
aCGH
16.1 years ago
pingzhao Hu
▴ 210
0
votes
5
replies
1.1k
views
failure to install: aCGH depends on unavailable package
aCGH
Cancer
aCGH
aCGH
Cancer
aCGH
updated 14.6 years ago by
Patrick Aboyoun
★ 1.6k • written 14.6 years ago by
Ramon Diaz
★ 1.1k
0
votes
0
replies
1.1k
views
Warning in mergeLevels
aCGH
Cancer
aCGH
aCGH
Cancer
aCGH
15.1 years ago
Oscar Rueda
▴ 40
0
votes
0
replies
1.1k
views
problems with getBioC() and getBioC(develOK=TRUE) on R 2.0.0
aCGH
GO
Biobase
DynDoc
annotate
edd
genefilter
geneplotter
rhdf5
multtest
ctc
ROC
affy
19.6 years ago
Goeman, J.J. MSTAT
▴ 150
0
votes
0
replies
1.1k
views
DNAcopy
aCGH
impute
DNAcopy
aCGH
snapCGH
CGHcall
aCGH
impute
DNAcopy
aCGH
snapCGH
CGHcall
14.3 years ago
Daniel Rico
▴ 110
0
votes
0
replies
1.1k
views
analysing NimbleGen CGH for CNV
aCGH
probe
aCGH
snapCGH
Ringo
aCGH
probe
aCGH
snapCGH
Ringo
13.4 years ago
Adeolu Adewoye
▴ 40
0
votes
0
replies
1.1k
views
aCGH
aCGH
CGH
impute
aCGH
aCGH
CGH
impute
aCGH
17.4 years ago
Sean Davis
21k
0
votes
1
reply
1.1k
views
Affymetrix 250K SNP aCGH
aCGH
SNP
Normalization
affy
aCGH
aCGH
SNP
Normalization
affy
aCGH
updated 13.0 years ago by
Djork Clevert
▴ 210 • written 13.0 years ago by
Adrian Johnson
▴ 330
0
votes
0
replies
1.1k
views
Detecting overrepresented genomic loci
aCGH
Clustering
CGH
geneplotter
DNAcopy
aCGH
GLAD
aCGH
Clustering
CGH
geneplotter
aCGH
19.1 years ago
Yi, Andrew
▴ 20
0
votes
0
replies
1.1k
views
problems with getBioC() and getBioC(develOK=TRUE) on R 2.0.0
aCGH
GO
Biobase
DynDoc
annotate
edd
genefilter
geneplotter
rhdf5
multtest
ctc
ROC
affy
19.6 years ago
rgentleman
★ 5.5k
0
votes
0
replies
1.1k
views
aCGH segmentation with DNAcopy
aCGH
probe
DNAcopy
aCGH
aCGH
probe
DNAcopy
aCGH
12.2 years ago
Emilie Lalonde
▴ 10
0
votes
1
reply
1.1k
views
Errors w/ getBioC(develOK =TRUE) with R2.0 devel
aCGH
GO
Biobase
DynDoc
annotate
edd
genefilter
geneplotter
rhdf5
multtest
ctc
ROC
affy
19.7 years ago
Matthew Hannah
▴ 940
0
votes
0
replies
1.0k
views
general CGH threshold question
aCGH
CGH
aCGH
GLAD
snapCGH
aCGH
CGH
aCGH
GLAD
snapCGH
14.7 years ago
Wolfgang RAFFELSBERGER
▴ 140
0
votes
0
replies
1.0k
views
Errors w/ getBioC()
aCGH
GO
Biobase
DynDoc
annotate
edd
genefilter
geneplotter
rhdf5
multtest
ctc
ROC
affy
19.7 years ago
Matthew Hannah
▴ 940
0
votes
5
replies
1.0k
views
Problems with aCGH library
aCGH
aCGH
aCGH
aCGH
19.5 years ago
Christopher, Neil NIH/NCI
▴ 70
0
votes
2
replies
1.0k
views
snapCGH; export results of summarize.clones() function from aCGH
aCGH
convert
aCGH
snapCGH
aCGH
convert
aCGH
snapCGH
16.9 years ago
Ian Roberts
▴ 70
0
votes
1
reply
1.0k
views
limma - NA values after withinarray normalization
aCGH
Normalization
limma
aCGH
aCGH
Normalization
limma
aCGH
updated 11.8 years ago by
Gordon Smyth
50k • written 11.8 years ago by
Zhang, Xueqiong
▴ 10
0
votes
3
replies
1.0k
views
Scripts to handle array CGH data files from NimbleGen
aCGH
Cancer
Breast
CGH
aCGH
aCGH
Cancer
Breast
CGH
aCGH
updated 17.9 years ago by
Todd Richmond
▴ 140 • written 17.9 years ago by
Steven McKinney
▴ 310
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