Bioconductor Affy

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GEO affy

4 weeks ago • updated 23 days ago Kurtis • 0

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frmaTools affy

updated 10 weeks ago by James W. MacDonald 65k • written 10 weeks ago by michelafrancesconi8 • 0

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maplot_function rma_function ExpressionSet MicroarrayData affy

5 weeks ago Mj.A. • 0

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Annotation affy oligo ffpe Annotation affy oligo ffpe

written 10.3 years ago by Guest User ★ 13k

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crlmm hapmapsnp6 genomewidesnp6Crlmm affy

updated 10 months ago by Kevin Blighe ★ 3.9k • written 10 months ago by Vincent J. Carey, Jr. 6.7k

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multtest affy multtest affy

updated 8 months ago by Amruta • 0 • written 20.7 years ago by Bob ▴ 20

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Bioconductor Install affy

updated 5 months ago by ATpoint ★ 4.1k • written 17 months ago by laujihen • 0

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affy affy

updated 8 weeks ago by Gordon Smyth 50k • written 19.0 years ago by SAURIN ★ 1.1k

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Pathways probe affy Pathways probe affy

written 17.6 years ago by mike Ad. ▴ 30

9 results • Page 1 of 1

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Comment: More regions in union when increasing DBA$config$mergeOverlap by Ian D. ▴ 70

Hello. Thanks for the reply. Sorry about this. My testing is telling me that 1 is the default (a gap), not -1 (1bp overlap). Negative …

Comment: Differences in differential analysis methods for RNA-Seq by ATpoint ★ 4.1k

> I am just re-processing due to being uncertain about how they used the edgeR analysis to reach gene level edgeR devs published something…

Comment: Differences in differential analysis methods for RNA-Seq by james.zhang20 • 0

Thanks for the explanations, it has helped clarify some things. Unfortunately, I am working from an early access public dataset (https://do…

Answer: Deseq2 and Normalization of RNA sequencing data by ATpoint ★ 4.1k

There is no expectation of normality that is realistic in terms of expression level. Levels are widely different between genes, and counts …

Comment: Differences in differential analysis methods for RNA-Seq by ATpoint ★ 4.1k

MAGeCK is a command line tool that is easy to use. I recommend you use it because a) the logFCs from DESeq2 and MAGeCK will be very similar…

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A: Error in DESeqDataSet : some values in assay are not integers

Bioconductor 3.19 is Released!

Answer: DEseq2 coefficient

SPIA plotP giving error

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