Showing : affy • reset
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AFFYMETRIX MISMATCH
affy affy
updated 20.5 years ago by 68k • written 20.5 years ago by ▴ 60
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8
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2.2k
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Large # of significant genes with SAM
Cancer affy Cancer affy
updated 20.5 years ago by ▴ 290 • written 20.5 years ago by ▴ 80
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687
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mas5calls *STILL* stops with an error
probe affy probe affy
20.5 years ago Seth Falcon ★ 7.4k
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2
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966
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mas5calls stops with an error
probe affy probe affy
20.5 years ago Emmanuel Levy ▴ 270
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0
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865
views
Technical replicates are really off - how to fix?
affy affy
20.5 years ago Ken Termiso ▴ 250
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1
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1.3k
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custom affy chip, mm values with NA (affy, makecdfenv)
cdf affy cdf affy
20.5 years ago James Bullard ▴ 70
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0
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893
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expresso problem
affy affy
20.5 years ago Jianping Jin ▴ 890
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2
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1.3k
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Missing probesets
cdf affy makecdfenv cdf affy makecdfenv
updated 20.5 years ago by ★ 5.5k • written 20.5 years ago by ▴ 110
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2
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1.7k
views
LIMMA : design (1, 2, 3, 3 ) , I gotEXCITINGresults, what could be the logic, since i h
Microarray GO affy limma EBarrays Microarray GO affy limma EBarrays
updated 20.6 years ago by ▴ 150 • written 20.6 years ago by ▴ 680
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1.2k
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LIMMA:design (1, 2, 3, 3 ) , I got EXCITING results what could be the logic, since i have 2 replicates for 3rd group only?
Microarray GO Regression affy limma Microarray GO Regression affy limma
20.6 years ago Gordon Smyth 53k
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1.5k
views
Error with lmFit
affy limma affy limma
20.6 years ago Sara Rollinson ▴ 10
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6
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1.7k
views
LIMMA : design (1, 2, 3, 3 ) , I got EXCITING results, what could be the logic, since i have 2 replicates for 3rd group only ?
affy affy
updated 20 months ago by 53k • written 20.6 years ago by ★ 1.1k
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1
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894
views
U133plus2.0 memory problem
affy affy
updated 20.6 years ago by 68k • written 20.6 years ago by ▴ 260
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1
reply
1.2k
views
Multifactorial affy data
Microarray affy Microarray affy
updated 20.6 years ago by 21k • written 20.6 years ago by ▴ 70
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3
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1.5k
views
Integrating Codelink data with bioconductor (using affy and limmafunctions)
Microarray Annotation Normalization affy limma PROcess codelink ASSIGN Microarray affy
updated 20.6 years ago by ▴ 760 • written 20.6 years ago by 53k
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2
replies
1.1k
views
ReadAffy for moe430acdf
cdf reposTools affy cdf reposTools affy
updated 20.6 years ago by ★ 7.4k • written 20.6 years ago by ▴ 160
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1
reply
709
views
CDF file for Rhodobacter
cdf affy cdf affy
updated 20.6 years ago by 68k • written 20.6 years ago by ▴ 10
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0
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1.4k
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Integrating Codelink data with bioconductor (using affy and limmafunctions)
Microarray Annotation Normalization affy limma PROcess codelink ASSIGN Microarray affy
20.6 years ago Diego Diez ▴ 760
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3
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1.1k
views
affy_1.5.8-1.zip affy.pdf missing under Release 1.5
affy affy
updated 20.6 years ago by ★ 7.4k • written 20.6 years ago by ▴ 680
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0
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1.2k
views
remove probes - code
cdf probe affy gcrma affyPLM cdf probe affy gcrma affyPLM
20.6 years ago Ariel Chernomoretz ▴ 380
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1
reply
694
views
sam analysis question
affy affy
updated 20.6 years ago by 68k • written 20.6 years ago by ▴ 20
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1
reply
957
views
affy quality analysis
Normalization affy Normalization affy
updated 20.6 years ago by ▴ 110 • written 20.6 years ago by ▴ 10
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1
reply
1.3k
views
solicitation for Affy bovine cdf environment
cdf affy makecdfenv cdf affy makecdfenv
updated 20.6 years ago by 68k • written 20.6 years ago by ▴ 10
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0
replies
784
views
Reading STDEV in CEL files
affy affy
20.6 years ago Mayte Suarez-Farinas ▴ 300
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0
replies
1.5k
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convert a Binary CEL file to txt
GO affy convert GO affy convert
20.6 years ago James W. MacDonald 68k
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1
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848
views
SNPs tool ???
affy affy
updated 20.6 years ago by 68k • written 20.6 years ago by ▴ 300
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0
replies
751
views
Re: justGCRMA and binary .CDF file
Microarray Cancer cdf probe affy matchprobes Microarray Cancer cdf probe affy
20.6 years ago James W. MacDonald 68k
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3
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1.4k
views
bioconductor affy lib with R 2.0.1
affy affy
updated 20.6 years ago by ★ 7.4k • written 20.6 years ago by ▴ 50
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1
reply
928
views
Bioconductor and R_LIBS
affy affy
updated 20.6 years ago by ▴ 40 • written 20.6 years ago by ★ 7.4k
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1
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972
views
probe alignment clustering
Annotation affy PROcess Annotation affy PROcess
updated 20.6 years ago by 21k • written 20.6 years ago by ▴ 80
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1
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1.2k
views
possible problems with call.exprs for mas, mas-R, and justPlier
cdf affy cdf affy
20.6 years ago Dick Beyer ★ 1.4k
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8
replies
2.1k
views
Tiling array application
probe affy gcrma probe affy gcrma
20.6 years ago Shinhan Shiu ▴ 60
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0
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787
views
rma on new samples
Classification probe Biobase affy PROcess Classification probe Biobase affy PROcess
20.6 years ago Kuhn, Max ▴ 70
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0
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898
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Bioconductor and R_LIBS
affy affy
20.6 years ago Steve Taylor ▴ 40
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7
replies
1.7k
views
217216_x_at is NOT dihydrolipoamide S-succinytransferase
Annotation affy Annotation affy
20.6 years ago Kevin Dawson ▴ 80
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0
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784
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What are the justPlier 4 processing steps?
Normalization affy gcrma Normalization affy gcrma
20.6 years ago Dick Beyer ★ 1.4k
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1
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1.3k
views
Problem about Affy
cdf affy cdf affy
updated 20.6 years ago by ★ 7.4k • written 20.6 years ago by ▴ 10
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2
replies
931
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HG-U133A-tag
cdf affy cdf affy
20.6 years ago Mohammad Esad-Djou ▴ 520
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0
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434
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ProbeId to GenBank Accession..
affy affy
20.6 years ago Khan, Sohail ▴ 490
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5
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2.5k
views
Order in which ReadAffy() and read.affybatch()
affy affy
updated 20.6 years ago by ▴ 940 • written 20.7 years ago by ▴ 420
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0
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751
views
Problem loadin repsTools
Visualization affy Visualization affy
20.7 years ago Zhi-Wei Lu ▴ 10
0
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2
replies
777
views
missing probesets when creating cdf package with makecdfenv
cdf affy cdf affy
updated 20.7 years ago by ★ 7.4k • written 20.7 years ago by ▴ 20
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0
replies
1.1k
views
LPE
cdf affy LPE ASSIGN cdf affy LPE ASSIGN
20.7 years ago Jain, Nitin ▴ 70
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0
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941
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Convert (altcdfenvs)CdfEnvAffy object to useable cdf package
cdf probe affy convert cdf probe affy convert
20.7 years ago Rhonda DeCook ▴ 90
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0
replies
724
views
affy chicken?
Annotation cdf affy Annotation cdf affy
20.7 years ago Dipl.-Ing. Johannes Rainer ▴ 430
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0
replies
700
views
Convert (altcdfenvs)CdfEnvAffy object to useable cdf package or environment?
cdf affy convert cdf affy convert
20.7 years ago Ken Termiso ▴ 250
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0
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1.1k
views
Can't normalize with alternative affy CDF environment
Annotation Normalization Preprocessing cdf affy gcrma Annotation Normalization cdf affy
20.7 years ago Ken Termiso ▴ 250
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5
replies
1.9k
views
single color microarray analysis
Microarray Normalization probe affy limma Microarray Normalization probe affy limma
updated 20.7 years ago by 53k • written 20.7 years ago by ▴ 120
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2
replies
1.0k
views
AffyBatch: Replacing probe set IDs with Genebank Accesion numbers?
probe affy probe affy
updated 20.7 years ago by ▴ 630 • written 20.7 years ago by ▴ 20
0
votes
0
replies
908
views
AffyBatch: Replacing probe set IDs with Genebank
probe affy AnnBuilder probe affy AnnBuilder
20.7 years ago Aedin Culhane ▴ 310
1,805 results • Page 25 of 37
Recent ...
Replies
Comment: What R/Bioconductor tools would you recommend for the analysis of sncRNA, specif by Matthew Thornton ▴ 380
WOW! Thank you so much for the information. I will do this.
Comment: "Watched Tags" are being erased rather than updated by RalphSavage99 • 0
Thanks for sharing https://github.com/Bioconductor/support.bioconductor.org/issues/112
Answer: Add additional maintainer for MOFA2 by shepherl 4.2k
These requests are best on the bioc-devel @ r-project.org or a request to maintainer @ bioconductor.org -- We would ideally need the curre…
Answer: After running samtools, the featureCounts command crashed. by Kevin Blighe ★ 4.0k
Hi Rui Tang, The "buffer overflow detected" error in featureCounts usually stems from a corrupted or malformed GTF file, often due to tr…
Answer: Problem with the TMB plot by Kevin Blighe ★ 4.0k
Hi, The linear TMB plot with no clustering suggests your variant calls may lack sample-specific discrimination, likely due to filtering ap…
Votes
Answer: What R/Bioconductor tools would you recommend for the analysis of sncRNA, specif
Using edgeR or DESeq2 to analyze allele-specific expression?
Answer: DESeq2 design for haplotype MPRA
Answer: Failure to download resources (MeSHDb) from AnnotationHub
Answer: Failure to download resources (MeSHDb) from AnnotationHub
Awards • All
Scholar to shepherl 4.2k
Scholar to James W. MacDonald 68k
Popular Question to Daniel Cameron ▴ 40
Popular Question to Peter Hickey ▴ 760
Popular Question to edward.esiribloom • 0
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