Showing : affy • reset
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Writing own package description.
probe affy probe affy
updated 20.2 years ago by 68k • written 20.2 years ago by ▴ 160
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What wrong with my data using LIMMA
Microarray affy limma affyPLM Microarray affy limma affyPLM
updated 20.2 years ago by ★ 1.8k • written 20.2 years ago by 53k
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creating cdf environment Correction
cdf affy cdf affy
updated 20.2 years ago by 68k • written 20.2 years ago by ▴ 20
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803
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creating cdf environment
cdf affy cdf affy
20.2 years ago Carol Hannam ▴ 20
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affymetrix latin square
Cancer probe affy Cancer probe affy
20.2 years ago Jennifer Lai ▴ 10
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1
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882
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[R] Bioconductor and R-devel
Microarray Cancer probe reposTools affy Microarray Cancer probe reposTools affy
20.2 years ago Seth Falcon ★ 7.4k
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affy and simpleaffy error
probe affy simpleaffy probe affy simpleaffy
20.2 years ago Narendra Kaushik ▴ 150
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1
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1.3k
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File permission failures when building Bioconductor on AMD64/Opteron
reposTools affy reposTools affy
20.2 years ago Michael Redmond ▴ 20
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1
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830
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Need help to creat AffyBatch object
Normalization probe affy Normalization probe affy
updated 20.2 years ago by ★ 6.5k • written 20.2 years ago by ▴ 210
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870
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Fw: duplicate genes in Affy arrays
hu6800 probe affy hu6800 probe affy
20.2 years ago Suresh Gopalan ▴ 60
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1
reply
953
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(x,y) coordinates and probe intensity
probe affy probe affy
updated 20.2 years ago by 68k • written 20.2 years ago by ▴ 20
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2
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1.1k
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goTools data formatting
Microarray GO affy Microarray GO affy
updated 20.3 years ago by ▴ 500 • written 20.3 years ago by ▴ 50
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packages for homzygosity mapping with 100k SNP Chip ?
affy affy
20.3 years ago Andreas Zankl ▴ 80
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2
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1.1k
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GCRMA, identical normalized values from 3 replicates
affy gcrma affy gcrma
updated 20.3 years ago by ▴ 200 • written 20.3 years ago by ▴ 810
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Mapping CDF from different array platforms
cdf affy altcdfenvs cdf affy altcdfenvs
updated 20.3 years ago by 21k • written 20.3 years ago by ▴ 30
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2
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adding annotation to exprSet
Annotation hgu133plus2 annotate affy limma Annotation hgu133plus2 annotate affy limma
20.3 years ago Andreas Zankl ▴ 80
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544
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getBioC() -- keeps grabbing everything
affy affy
20.3 years ago Seth Falcon ★ 7.4k
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892
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Limma using all probes on Affy chip
Normalization probe affy limma affyPLM Normalization probe affy limma affyPLM
20.3 years ago Gordon Smyth 53k
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1
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1.2k
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Limma using all probes on Affy chip
Normalization probe affy limma Normalization probe affy limma
updated 20.3 years ago by ▴ 60 • written 20.3 years ago by ▴ 140
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moe430a and moe430av2 comparison
moe430a cdf probe reposTools affy moe430a cdf probe reposTools affy
20.3 years ago Margaret Gardiner-Garden ▴ 160
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965
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Problems with aCGH library
aCGH affy aCGH aCGH affy aCGH
20.3 years ago Justin Borevitz ▴ 170
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1.2k
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makecdfenv, bg.correct
affy affy
updated 20.3 years ago by ▴ 380 • written 20.3 years ago by ▴ 170
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1.1k
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affy: adding new probe set definitions and making rma expression summaries
probe affy altcdfenvs probe affy altcdfenvs
20.4 years ago Mette Langaas ▴ 10
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1
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1.2k
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making a cdf environment
cdf affy PROcess cdf affy PROcess
updated 20.4 years ago by 68k • written 20.4 years ago by ▴ 10
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0
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1.1k
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Agilent Arrays
affy oligo BEAT affy oligo BEAT
20.4 years ago Naomi Altman ★ 6.0k
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6
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2.0k
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Many missing GO terms from GOHyperG call using mgu74av2
GO Survival hgu95av2 mgu74av2 Ruuid annotate multtest affy graph annaffy RBGL GOstats
updated 20.4 years ago by ★ 7.4k • written 20.4 years ago by ★ 1.4k
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Agilent Arrays
affy limma marray affy limma marray
updated 20.4 years ago by ▴ 30 • written 20.4 years ago by ▴ 340
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1.2k
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Agilent Arrays
affy limma marray affy limma marray
20.4 years ago Gordon Smyth 53k
0
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1.2k
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differences or 1-channel (was Re: Agilent Arrays)
Normalization GO probe affy affydata vsn limma marray BEAT Normalization GO probe affy
20.4 years ago Naomi Altman ★ 6.0k
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1.7k
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Bioconductor Digest, Vol 28, Issue 23
Normalization probe affy affydata limma marray BEAT Normalization probe affy affydata
updated 20.4 years ago by ★ 13k • written 20.4 years ago by 53k
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1.3k
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simpleAffy, custom chip error
Microarray Cancer cdf probe Biobase affy gcrma matchprobes simpleaffy Microarray Cancer
updated 20.4 years ago by ★ 1.1k • written 20.4 years ago by ▴ 10
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Help with SOM membership
affy affy
20.4 years ago Ken Termiso ▴ 250
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3
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1.2k
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goodness-of-fit for limma
Microarray affy limma Microarray affy limma
20.4 years ago Ye, Bin ▴ 150
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2
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1.3k
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Use of RMA in increasingly-sized datasets
Cancer affy PROcess Cancer affy PROcess
updated 20.4 years ago by ▴ 230 • written 20.5 years ago by ▴ 110
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2
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Re: how to evaluate the arrays quality?
GO affy affyPLM GO affy affyPLM
updated 20.5 years ago by ▴ 110 • written 20.5 years ago by ▴ 350
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0
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837
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100K SNP chips for linkage
SNP Microarray Infrastructure Cancer affy SNP Microarray Infrastructure Cancer affy
20.5 years ago James W. MacDonald 68k
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Defining and handling replicates
GO affy limma affylmGUI GO affy limma affylmGUI
updated 20.5 years ago by 53k • written 20.5 years ago by ▴ 70
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1.3k
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annotation problem with hgu133plus2
Annotation GO hgu133plus2 cdf annotate affy siggenes annaffy Annotation GO hgu133plus2
20.5 years ago Yanqin Yang ▴ 250
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2.0k
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how to normalize by columns
Normalization affy vsn Normalization affy vsn
updated 20.5 years ago by 53k • written 20.5 years ago by ▴ 40
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0
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annotation problem with hgu133plus2
GO cdf annotate reposTools affy siggenes annaffy GO cdf annotate reposTools affy
20.5 years ago Seth Falcon ★ 7.4k
0
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1
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639
views
(no subject)
affy affy
updated 20.5 years ago by 21k • written 20.5 years ago by ▴ 20
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AffyProbes and genome
Microarray Alignment Annotation Cancer probe affy Microarray Alignment Annotation Cancer
updated 20.5 years ago by ▴ 20 • written 20.5 years ago by ▴ 110
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2
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1.5k
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bioconductor 1.6, R 2.1.0a: "can't locate file for: -lcc_dynamic"
affy affy
updated 20.5 years ago by ▴ 430 • written 20.5 years ago by ★ 1.1k
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0
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671
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Re: Working flow_own CEL file reading problem
cdf affy cdf affy
20.5 years ago Seth Falcon ★ 7.4k
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3
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1.7k
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Working flow_own CEL file reading problem
Normalization cdf affy makecdfenv Normalization cdf affy makecdfenv
updated 20.5 years ago by 68k • written 20.5 years ago by ▴ 40
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1
reply
740
views
makeProbePackage problem
cdf probe affy cdf probe affy
updated 20.5 years ago by 68k • written 20.5 years ago by ▴ 30
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0
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1.0k
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HG-U133A-tag and SpikeIn
probe affy probe affy
20.5 years ago Mohammad Esad-Djou ▴ 520
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0
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796
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<no subject>
probe affy probe affy
20.5 years ago Mohammad Esad-Djou ▴ 520
0
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1
reply
1.4k
views
Error installing genefilter
annotate genefilter affy vsn annotate genefilter affy vsn
updated 20.5 years ago by ★ 13k • written 20.5 years ago by ▴ 770
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3
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1.3k
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quality data check
affy vsn limma affy vsn limma
updated 20.5 years ago by 21k • written 20.5 years ago by ▴ 770
1,805 results • Page 24 of 37
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Comment: What R/Bioconductor tools would you recommend for the analysis of sncRNA, specif by Matthew Thornton ▴ 380
WOW! Thank you so much for the information. I will do this.
Comment: "Watched Tags" are being erased rather than updated by RalphSavage99 • 0
Thanks for sharing https://github.com/Bioconductor/support.bioconductor.org/issues/112
Answer: Add additional maintainer for MOFA2 by shepherl 4.2k
These requests are best on the bioc-devel @ r-project.org or a request to maintainer @ bioconductor.org -- We would ideally need the curre…
Answer: After running samtools, the featureCounts command crashed. by Kevin Blighe ★ 4.0k
Hi Rui Tang, The "buffer overflow detected" error in featureCounts usually stems from a corrupted or malformed GTF file, often due to tr…
Answer: Problem with the TMB plot by Kevin Blighe ★ 4.0k
Hi, The linear TMB plot with no clustering suggests your variant calls may lack sample-specific discrimination, likely due to filtering ap…
Votes
Answer: What R/Bioconductor tools would you recommend for the analysis of sncRNA, specif
Using edgeR or DESeq2 to analyze allele-specific expression?
Answer: DESeq2 design for haplotype MPRA
Answer: Failure to download resources (MeSHDb) from AnnotationHub
Answer: Failure to download resources (MeSHDb) from AnnotationHub
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Scholar to shepherl 4.2k
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