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annotate
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1.2k
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ChIPpeakAnno Question, regarding BED scores
Annotation
annotate
ChIPpeakAnno
Annotation
annotate
ChIPpeakAnno
12.1 years ago
Julie Zhu
★ 4.3k
3
votes
5
replies
5.8k
views
getBM returns shorter vectors than values
annotate
biomaRt
oligo
annotate
biomaRt
oligo
updated 12.2 years ago by
Steffen Durinck
▴ 540 • written 12.2 years ago by
Lescai, Francesco
▴ 380
0
votes
0
replies
1.5k
views
Annotating Results for HuEx 1.0 STv2 - Oligo
annotate
oligo
annotate
oligo
12.2 years ago
Bade
▴ 310
0
votes
0
replies
1.4k
views
ChIPpeakAnno::assignChromosomeRegion
annotate
annotate
12.2 years ago
Julie Zhu
★ 4.3k
0
votes
3
replies
1.4k
views
Annotate blastSequences Returns No Result
annotate
annotate
updated 12.2 years ago by
Martin Morgan
25k • written 12.2 years ago by
Dario Strbenac
★ 1.6k
0
votes
2
replies
2.0k
views
GViz - successes and a few hopes
annotate
Gviz
annotate
Gviz
updated 12.3 years ago by
florian.hahne@novartis.com
★ 1.6k • written 12.3 years ago by
Malcolm Cook
★ 1.6k
0
votes
1
reply
1.4k
views
答复: an error in AnnotationForge
Annotation
ChipName
annotate
affy
AnnotationForge
Annotation
ChipName
annotate
affy
12.3 years ago
joseph
▴ 50
0
votes
1
reply
1.3k
views
an error in AnnotationForge
Annotation
ChipName
annotate
affy
AnnotationForge
Annotation
ChipName
annotate
affy
updated 12.3 years ago by
Marc Carlson
★ 7.2k • written 12.3 years ago by
joseph
▴ 50
0
votes
0
replies
1.2k
views
Venn diagrams using ChIPpeakAnno
annotate
ChIPpeakAnno
annotate
ChIPpeakAnno
12.4 years ago
Julie Zhu
★ 4.3k
0
votes
4
replies
2.1k
views
FeatureExpressionSet using list.files() in place of read.xysfiles()
Microarray
Annotation
GO
Organism
probe
annotate
limma
convert
pdInfoBuilder
sva
GO
sva
updated 12.4 years ago by
Benilton Carvalho
★ 4.3k • written 12.4 years ago by
Johnson, Franklin Theodore
▴ 140
0
votes
0
replies
1.5k
views
Error in makeOrgPackageFromNCBI
GO
OrgDb
annotate
GOstats
GO
OrgDb
annotate
GOstats
12.4 years ago
Chris Whelan
▴ 60
0
votes
10
replies
3.8k
views
PAIR files -- feature set table
Microarray
Annotation
Organism
annotate
pdInfoBuilder
Microarray
Annotation
Organism
updated 12.4 years ago by
Benilton Carvalho
★ 4.3k • written 12.4 years ago by
Guest User
★ 13k
0
votes
2
replies
1.4k
views
Reading Affy CEL files
annotate
affy
convert
oligo
annotate
affy
convert
oligo
updated 12.4 years ago by
Sidders, Benjamin
▴ 40 • written 12.4 years ago by
Ranjani R
▴ 10
0
votes
4
replies
2.0k
views
Howto annotate blast subject.id with AnnotationDbi
Alignment
GO
annotate
AnnotationDbi
Alignment
GO
annotate
AnnotationDbi
updated 12.5 years ago by
Marc Carlson
★ 7.2k • written 12.5 years ago by
Arnaud Mounier
▴ 40
0
votes
2
replies
2.6k
views
Annotation of Human Exon 1.0 ST
annotate
biomaRt
oligo
annotate
biomaRt
oligo
updated 12.5 years ago by
Benilton Carvalho
★ 4.3k • written 12.5 years ago by
Guest User
★ 13k
0
votes
1
reply
1.3k
views
Add new affy organism platform
Microarray
Annotation
Organism
cdf
db0
probe
annotate
affy
Microarray
Annotation
cdf
updated 12.5 years ago by
Marc Carlson
★ 7.2k • written 12.5 years ago by
Ekta Jain
▴ 50
0
votes
0
replies
1.0k
views
where can I obtain the package of hugene20st.db
probe
annotate
probe
annotate
12.5 years ago
Guannan Sun
▴ 10
0
votes
1
reply
1.8k
views
biomaRt not returning expected results
Annotation
annotate
biomaRt
Annotation
annotate
biomaRt
updated 12.5 years ago by
Steffen Durinck
▴ 540 • written 12.5 years ago by
Guest User
★ 13k
0
votes
0
replies
1.3k
views
RE : ChIPpeakAnno_2.8.0 assignCromosomeRegion
annotate
Category
ChIPpeakAnno
annotate
Category
ChIPpeakAnno
12.6 years ago
Julie Zhu
★ 4.3k
0
votes
1
reply
1.3k
views
Annotated a snp list to find where these snp are located.
SNP
annotate
SNP
annotate
updated 12.6 years ago by
Valerie Obenchain
★ 6.8k • written 12.6 years ago by
Fabrice Tourre
▴ 970
0
votes
7
replies
2.3k
views
Fwd: GO terms: Annotation for HumanMethylation450
Annotation
Pathways
GO
probe
annotate
Annotation
Pathways
GO
probe
annotate
12.6 years ago
Jinyan Huang
▴ 110
0
votes
2
replies
1.2k
views
Fwd: GO terms: Annotation for HumanMethylation450
Annotation
Pathways
GO
probe
annotate
Annotation
Pathways
GO
probe
annotate
updated 12.6 years ago by
Jinyan Huang
▴ 110 • written 12.6 years ago by
Tim Triche
★ 4.2k
0
votes
2
replies
1.5k
views
ChIPpeakAnno
annotate
ChIPpeakAnno
annotate
ChIPpeakAnno
12.7 years ago • updated 12.6 years ago
Julie Zhu
★ 4.3k
0
votes
0
replies
944
views
Annotating Illumina Mouse Ref8 array in BRB
annotate
annotate
12.6 years ago
Tejas Tirodkar
▴ 10
0
votes
2
replies
1.6k
views
ChIPpeakAnno query
Microarray
Annotation
Cancer
Prostate
annotate
affy
convert
biomaRt
ChIPpeakAnno
Cancer
updated 12.7 years ago by
Luke Selth
▴ 10 • written 12.7 years ago by
Julie Zhu
★ 4.3k
0
votes
0
replies
1.2k
views
DEXseq: transcript plot
annotate
annotate
12.7 years ago
Vincenzo Capece
▴ 140
0
votes
4
replies
3.5k
views
how to annotate Illumina HumanHT-12 v3 chips?
annotate
annotate
updated 12.7 years ago by
Ying W
▴ 90 • written 12.7 years ago by
Feng Tian
▴ 110
0
votes
0
replies
1.1k
views
How to annotate Illumina HumanHT-12 v3 chips?
annotate
annotate
12.7 years ago
Feng Tian
▴ 110
0
votes
0
replies
1.7k
views
How to annotate Illumina HumanHT-12 v 3 expression beadchip?
annotate
annotate
12.7 years ago
Feng Tian
▴ 110
1
vote
2
replies
3.9k
views
mm10 goseq supported genome
annotate
goseq
annotate
goseq
updated 12.8 years ago by
Nadia Davidson
▴ 320 • written 12.8 years ago by
Vincenzo Capece
▴ 140
0
votes
2
replies
2.0k
views
GSEABase error parsing msigdb_v3.1.xml
GO
Infrastructure
hgu95av2
Biobase
annotate
graph
Category
AnnotationDbi
BiocGenerics
GO
updated 12.8 years ago by
Martin Morgan
25k • written 12.8 years ago by
Lina Hultin-Rosenberg
▴ 80
0
votes
3
replies
2.9k
views
Filtering out duplicate probes in Affy data
Annotation
mouse4302
annotate
affy
Annotation
mouse4302
annotate
affy
updated 12.8 years ago by
James W. MacDonald
68k • written 12.8 years ago by
hsharm03@students.poly.edu
▴ 180
0
votes
0
replies
1.4k
views
importing data problem with methyAnalysis package
Biophysics
Annotation
Preprocessing
annotate
lumi
methyAnalysis
Biophysics
Annotation
lumi
12.9 years ago
Pan Du
▴ 440
0
votes
3
replies
2.3k
views
Use ChIPpeakAnno to find two-sided nearest genes to a peak
AnnotationData
annotate
ChIPpeakAnno
AnnotationData
annotate
ChIPpeakAnno
12.9 years ago
Julie Zhu
★ 4.3k
0
votes
5
replies
2.0k
views
oligo package
Microarray
Annotation
annotate
PROcess
Microarray
Annotation
annotate
PROcess
updated 12.9 years ago by
James W. MacDonald
68k • written 12.9 years ago by
Guest User
★ 13k
0
votes
2
replies
2.5k
views
locateVariants - error with GRanges query?
annotate
annotate
13.0 years ago
Lescai, Francesco
▴ 380
0
votes
3
replies
1.7k
views
VariantAnnotation - dots in the INFO field give an error
annotate
annotate
written 13.0 years ago by
Jarno Tuimala
▴ 40
0
votes
0
replies
1.3k
views
SNP6.0 annotation
SNP
Annotation
probe
annotate
SIM
SNP
Annotation
probe
annotate
SIM
13.0 years ago
Guest User
★ 13k
0
votes
1
reply
1.5k
views
How to get Gene ontology (GO) terms per probe
GO
Clustering
rat2302
annotate
GO
Clustering
rat2302
annotate
updated 13.1 years ago by
James W. MacDonald
68k • written 13.1 years ago by
Guest User
★ 13k
0
votes
0
replies
1.8k
views
450K annotation: discrepancy between GEO GPL and Bioconductor annotation
Annotation
db0
probe
annotate
PROcess
GenomicFeatures
GenomicRanges
Annotation
db0
probe
13.1 years ago
Marc Carlson
★ 7.2k
0
votes
3
replies
1.7k
views
ChIPpeakAnno problem w getAllPeakSequence()
GO
annotate
ChIPpeakAnno
GO
annotate
ChIPpeakAnno
updated 13.1 years ago by
Ou, Jianhong
★ 1.3k • written 13.1 years ago by
Anna
▴ 50
0
votes
3
replies
2.0k
views
Assigning gene symbols to Affymetrix data and averaging probes
Annotation
annotate
affy
limma
convert
Annotation
annotate
affy
limma
convert
updated 13.1 years ago by
James W. MacDonald
68k • written 13.1 years ago by
Hoyles, Lesley
▴ 50
0
votes
0
replies
974
views
findOverlappingPeaks in ChipPeakAnno
annotate
annotate
13.2 years ago
Julie Zhu
★ 4.3k
0
votes
0
replies
1.4k
views
question regarding ChIPPeakAnno use
Annotation
annotate
GLAD
ChIPpeakAnno
Annotation
annotate
GLAD
ChIPpeakAnno
13.2 years ago
Julie Zhu
★ 4.3k
0
votes
1
reply
1.5k
views
Annotate Affy SNP6 probes in bioc
hgu133a
annotate
hgu133a
annotate
updated 13.2 years ago by
Vincent J. Carey, Jr.
6.7k • written 13.2 years ago by
Christian Ruckert
▴ 170
0
votes
4
replies
3.9k
views
How to combine VCF-class and data.frame with annotations
GO
annotate
convert
ggbio
GO
annotate
convert
ggbio
written 13.2 years ago by
Stefan Dentro
▴ 70
0
votes
3
replies
5.0k
views
Affymetrix annotation using R or NetAffx
annotate
annotate
updated 13.2 years ago by
James W. MacDonald
68k • written 13.2 years ago by
Natasha
▴ 440
0
votes
1
reply
1.4k
views
Question about ChIPpeakAnno R package
AnnotationData
annotate
ChIPpeakAnno
BayesPeak
AnnotationData
annotate
ChIPpeakAnno
13.3 years ago
Julie Zhu
★ 4.3k
0
votes
0
replies
843
views
how to do GO analysis if i have some sequences
Annotation
GO
annotate
Annotation
GO
annotate
13.3 years ago
wang peter
★ 2.0k
0
votes
1
reply
1.1k
views
LIMMA -- obtaining values used to calculate lfc
probe
annotate
probe
annotate
updated 13.3 years ago by
James W. MacDonald
68k • written 13.3 years ago by
Guest User
★ 13k
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Comment: After running samtools, the featureCounts command crashed.
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surprised.swordtail.tlfy
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Hey Rui, that's a tricky error! Kevin's suggestion about the GTF file makes total sense. I've had similar issues with file paths in WSL cau…
Comment: How to reverse complement some elements of a DNAStringSet
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Hey, thanks for the insightful post! I totally get what you mean about the learning process. Sometimes you try a new approach and it just d…
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Comment: What R/Bioconductor tools would you recommend for the analysis of sncRNA, specif
by
Matthew Thornton
▴ 380
WOW! Thank you so much for the information. I will do this.
Comment: "Watched Tags" are being erased rather than updated
by
RalphSavage99
• 0
Thanks for sharing https://github.com/Bioconductor/support.bioconductor.org/issues/112
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Answer: What R/Bioconductor tools would you recommend for the analysis of sncRNA, specif
Using edgeR or DESeq2 to analyze allele-specific expression?
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Answer: Failure to download resources (MeSHDb) from AnnotationHub
Answer: Failure to download resources (MeSHDb) from AnnotationHub
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