Showing : annotate • reset
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ChIPpeakAnno Question, regarding BED scores
Annotation annotate ChIPpeakAnno Annotation annotate ChIPpeakAnno
12.1 years ago Julie Zhu ★ 4.3k
3
votes
5
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5.8k
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getBM returns shorter vectors than values
annotate biomaRt oligo annotate biomaRt oligo
updated 12.2 years ago by ▴ 540 • written 12.2 years ago by ▴ 380
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Annotating Results for HuEx 1.0 STv2 - Oligo
annotate oligo annotate oligo
12.2 years ago Bade ▴ 310
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ChIPpeakAnno::assignChromosomeRegion
annotate annotate
12.2 years ago Julie Zhu ★ 4.3k
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3
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1.4k
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Annotate blastSequences Returns No Result
annotate annotate
updated 12.2 years ago by 25k • written 12.2 years ago by ★ 1.6k
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2
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2.0k
views
GViz - successes and a few hopes
annotate Gviz annotate Gviz
updated 12.3 years ago by ★ 1.6k • written 12.3 years ago by ★ 1.6k
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1
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1.4k
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答复: an error in AnnotationForge
Annotation ChipName annotate affy AnnotationForge Annotation ChipName annotate affy
12.3 years ago joseph ▴ 50
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1
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1.3k
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an error in AnnotationForge
Annotation ChipName annotate affy AnnotationForge Annotation ChipName annotate affy
updated 12.3 years ago by ★ 7.2k • written 12.3 years ago by ▴ 50
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1.2k
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Venn diagrams using ChIPpeakAnno
annotate ChIPpeakAnno annotate ChIPpeakAnno
12.4 years ago Julie Zhu ★ 4.3k
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votes
4
replies
2.1k
views
FeatureExpressionSet using list.files() in place of read.xysfiles()
Microarray Annotation GO Organism probe annotate limma convert pdInfoBuilder sva GO sva
updated 12.4 years ago by ★ 4.3k • written 12.4 years ago by ▴ 140
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0
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1.5k
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Error in makeOrgPackageFromNCBI
GO OrgDb annotate GOstats GO OrgDb annotate GOstats
12.4 years ago Chris Whelan ▴ 60
0
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10
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3.8k
views
PAIR files -- feature set table
Microarray Annotation Organism annotate pdInfoBuilder Microarray Annotation Organism
updated 12.4 years ago by ★ 4.3k • written 12.4 years ago by ★ 13k
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2
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1.4k
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Reading Affy CEL files
annotate affy convert oligo annotate affy convert oligo
updated 12.4 years ago by ▴ 40 • written 12.4 years ago by ▴ 10
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4
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2.0k
views
Howto annotate blast subject.id with AnnotationDbi
Alignment GO annotate AnnotationDbi Alignment GO annotate AnnotationDbi
updated 12.5 years ago by ★ 7.2k • written 12.5 years ago by ▴ 40
0
votes
2
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2.6k
views
Annotation of Human Exon 1.0 ST
annotate biomaRt oligo annotate biomaRt oligo
updated 12.5 years ago by ★ 4.3k • written 12.5 years ago by ★ 13k
0
votes
1
reply
1.3k
views
Add new affy organism platform
Microarray Annotation Organism cdf db0 probe annotate affy Microarray Annotation cdf
updated 12.5 years ago by ★ 7.2k • written 12.5 years ago by ▴ 50
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1.0k
views
where can I obtain the package of hugene20st.db
probe annotate probe annotate
12.5 years ago Guannan Sun ▴ 10
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1
reply
1.8k
views
biomaRt not returning expected results
Annotation annotate biomaRt Annotation annotate biomaRt
updated 12.5 years ago by ▴ 540 • written 12.5 years ago by ★ 13k
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RE : ChIPpeakAnno_2.8.0 assignCromosomeRegion
annotate Category ChIPpeakAnno annotate Category ChIPpeakAnno
12.6 years ago Julie Zhu ★ 4.3k
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votes
1
reply
1.3k
views
Annotated a snp list to find where these snp are located.
SNP annotate SNP annotate
updated 12.6 years ago by ★ 6.8k • written 12.6 years ago by ▴ 970
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votes
7
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2.3k
views
Fwd: GO terms: Annotation for HumanMethylation450
Annotation Pathways GO probe annotate Annotation Pathways GO probe annotate
12.6 years ago Jinyan Huang ▴ 110
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2
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1.2k
views
Fwd: GO terms: Annotation for HumanMethylation450
Annotation Pathways GO probe annotate Annotation Pathways GO probe annotate
updated 12.6 years ago by ▴ 110 • written 12.6 years ago by ★ 4.2k
0
votes
2
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1.5k
views
ChIPpeakAnno
annotate ChIPpeakAnno annotate ChIPpeakAnno
12.7 years ago • updated 12.6 years ago Julie Zhu ★ 4.3k
0
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0
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944
views
Annotating Illumina Mouse Ref8 array in BRB
annotate annotate
12.6 years ago Tejas Tirodkar ▴ 10
0
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2
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1.6k
views
ChIPpeakAnno query
Microarray Annotation Cancer Prostate annotate affy convert biomaRt ChIPpeakAnno Cancer
updated 12.7 years ago by ▴ 10 • written 12.7 years ago by ★ 4.3k
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0
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1.2k
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DEXseq: transcript plot
annotate annotate
12.7 years ago Vincenzo Capece ▴ 140
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4
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3.5k
views
how to annotate Illumina HumanHT-12 v3 chips?
annotate annotate
updated 12.7 years ago by ▴ 90 • written 12.7 years ago by ▴ 110
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How to annotate Illumina HumanHT-12 v3 chips?
annotate annotate
12.7 years ago Feng Tian ▴ 110
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0
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1.7k
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How to annotate Illumina HumanHT-12 v 3 expression beadchip?
annotate annotate
12.7 years ago Feng Tian ▴ 110
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2
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3.9k
views
mm10 goseq supported genome
annotate goseq annotate goseq
updated 12.8 years ago by ▴ 320 • written 12.8 years ago by ▴ 140
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2
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2.0k
views
GSEABase error parsing msigdb_v3.1.xml
GO Infrastructure hgu95av2 Biobase annotate graph Category AnnotationDbi BiocGenerics GO
updated 12.8 years ago by 25k • written 12.8 years ago by ▴ 80
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3
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2.9k
views
Filtering out duplicate probes in Affy data
Annotation mouse4302 annotate affy Annotation mouse4302 annotate affy
updated 12.8 years ago by 68k • written 12.8 years ago by ▴ 180
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importing data problem with methyAnalysis package
Biophysics Annotation Preprocessing annotate lumi methyAnalysis Biophysics Annotation lumi
12.9 years ago Pan Du ▴ 440
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votes
3
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2.3k
views
Use ChIPpeakAnno to find two-sided nearest genes to a peak
AnnotationData annotate ChIPpeakAnno AnnotationData annotate ChIPpeakAnno
12.9 years ago Julie Zhu ★ 4.3k
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5
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2.0k
views
oligo package
Microarray Annotation annotate PROcess Microarray Annotation annotate PROcess
updated 12.9 years ago by 68k • written 12.9 years ago by ★ 13k
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2
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2.5k
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locateVariants - error with GRanges query?
annotate annotate
13.0 years ago Lescai, Francesco ▴ 380
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3
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1.7k
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VariantAnnotation - dots in the INFO field give an error
annotate annotate
written 13.0 years ago by ▴ 40
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1.3k
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SNP6.0 annotation
SNP Annotation probe annotate SIM SNP Annotation probe annotate SIM
13.0 years ago Guest User ★ 13k
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1
reply
1.5k
views
How to get Gene ontology (GO) terms per probe
GO Clustering rat2302 annotate GO Clustering rat2302 annotate
updated 13.1 years ago by 68k • written 13.1 years ago by ★ 13k
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1.8k
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450K annotation: discrepancy between GEO GPL and Bioconductor annotation
Annotation db0 probe annotate PROcess GenomicFeatures GenomicRanges Annotation db0 probe
13.1 years ago Marc Carlson ★ 7.2k
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votes
3
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1.7k
views
ChIPpeakAnno problem w getAllPeakSequence()
GO annotate ChIPpeakAnno GO annotate ChIPpeakAnno
updated 13.1 years ago by ★ 1.3k • written 13.1 years ago by ▴ 50
0
votes
3
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2.0k
views
Assigning gene symbols to Affymetrix data and averaging probes
Annotation annotate affy limma convert Annotation annotate affy limma convert
updated 13.1 years ago by 68k • written 13.1 years ago by ▴ 50
0
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0
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974
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findOverlappingPeaks in ChipPeakAnno
annotate annotate
13.2 years ago Julie Zhu ★ 4.3k
0
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0
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1.4k
views
question regarding ChIPPeakAnno use
Annotation annotate GLAD ChIPpeakAnno Annotation annotate GLAD ChIPpeakAnno
13.2 years ago Julie Zhu ★ 4.3k
0
votes
1
reply
1.5k
views
Annotate Affy SNP6 probes in bioc
hgu133a annotate hgu133a annotate
updated 13.2 years ago by 6.7k • written 13.2 years ago by ▴ 170
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votes
4
replies
3.9k
views
How to combine VCF-class and data.frame with annotations
GO annotate convert ggbio GO annotate convert ggbio
written 13.2 years ago by ▴ 70
0
votes
3
replies
5.0k
views
Affymetrix annotation using R or NetAffx
annotate annotate
updated 13.2 years ago by 68k • written 13.2 years ago by ▴ 440
0
votes
1
reply
1.4k
views
Question about ChIPpeakAnno R package
AnnotationData annotate ChIPpeakAnno BayesPeak AnnotationData annotate ChIPpeakAnno
13.3 years ago Julie Zhu ★ 4.3k
0
votes
0
replies
843
views
how to do GO analysis if i have some sequences
Annotation GO annotate Annotation GO annotate
13.3 years ago wang peter ★ 2.0k
0
votes
1
reply
1.1k
views
LIMMA -- obtaining values used to calculate lfc
probe annotate probe annotate
updated 13.3 years ago by 68k • written 13.3 years ago by ★ 13k
346 results • Page 2 of 7
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Comment: After running samtools, the featureCounts command crashed. by surprised.swordtail.tlfy • 0
Hey Rui, that's a tricky error! Kevin's suggestion about the GTF file makes total sense. I've had similar issues with file paths in WSL cau…
Comment: How to reverse complement some elements of a DNAStringSet by Lenson • 0
Hey, thanks for the insightful post! I totally get what you mean about the learning process. Sometimes you try a new approach and it just d…
Comment: Research and Service Group Leader positions in AI in Biology at EMBL by eja.gssssswssswwse.r.m • 0
For mobile gamers seeking innovative experiences, free download ck999 game brings engaging gameplay right to your device. Whether exploring…
Comment: What R/Bioconductor tools would you recommend for the analysis of sncRNA, specif by Matthew Thornton ▴ 380
WOW! Thank you so much for the information. I will do this.
Comment: "Watched Tags" are being erased rather than updated by RalphSavage99 • 0
Thanks for sharing https://github.com/Bioconductor/support.bioconductor.org/issues/112
Votes
Answer: What R/Bioconductor tools would you recommend for the analysis of sncRNA, specif
Using edgeR or DESeq2 to analyze allele-specific expression?
Answer: DESeq2 design for haplotype MPRA
Answer: Failure to download resources (MeSHDb) from AnnotationHub
Answer: Failure to download resources (MeSHDb) from AnnotationHub
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