Showing : annotate • reset
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5
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1.4k
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Question about ChIPpeakAnno
annotate annotate
13.7 years ago Julie Zhu ★ 4.3k
0
votes
1
reply
1.1k
views
FW: Gene list annotation
Annotation GO annotate limma GOstats topGO Annotation GO annotate limma GOstats topGO
updated 13.7 years ago by 21k • written 13.7 years ago by ▴ 10
0
votes
1
reply
1.2k
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Gene list annotation
Annotation GO annotate Annotation GO annotate
updated 13.7 years ago by 21k • written 13.7 years ago by ★ 13k
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votes
11
replies
2.3k
views
Problem with "ragene10stprobeset.db" package
Annotation annotate Annotation annotate
updated 13.8 years ago by 68k • written 13.8 years ago by ▴ 20
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2
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1.3k
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Affymetrix data
Normalization Pathways GO annotate Normalization Pathways GO annotate
updated 13.8 years ago by ▴ 200 • written 13.8 years ago by ▴ 180
0
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2
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1.4k
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ChIPpeakAnno: Inquiry for Worm Analysis
Annotation GO annotate convert ChIPpeakAnno Annotation GO annotate convert ChIPpeakAnno
13.9 years ago Julie Zhu ★ 4.3k
0
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2
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1.2k
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ChIPpeakAnno - Request of information
Annotation annotate ChIPpeakAnno Annotation annotate ChIPpeakAnno
updated 13.9 years ago by ★ 1.3k • written 13.9 years ago by ★ 4.3k
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4
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1.5k
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annotate htmlpage error
annotate annotate
13.9 years ago Georg Otto ▴ 120
0
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4
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2.7k
views
ChIPpeakAnno as.data.frame error
GO AnnotationData annotate convert ChIPpeakAnno GO AnnotationData annotate convert
updated 13.9 years ago by ★ 4.3k • written 13.9 years ago by ▴ 910
0
votes
0
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2.0k
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Deferential gene expression databases
Microarray Genetics Annotation Normalization Pathways GO Cancer BSgenome probe annotate
14.0 years ago saikouy bah ▴ 30
0
votes
2
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2.0k
views
ChIPpeakAnno
GO BSgenome annotate BSgenome ChIPpeakAnno GO BSgenome annotate BSgenome ChIPpeakAnno
updated 14.0 years ago by ▴ 10 • written 14.0 years ago by ▴ 10
0
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1
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2.0k
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Annotating limma results: Affymetrix probe IDs not mapping to hugene10stprobeset.db
Microarray Annotation annotate limma Microarray Annotation annotate limma
updated 14.1 years ago by 68k • written 14.1 years ago by ▴ 290
0
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1
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2.5k
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limma topTable with gene symbols in output: annotate problem
Annotation cdf probe annotate affy limma biomaRt Annotation cdf probe annotate affy
updated 14.1 years ago by ★ 7.2k • written 14.1 years ago by ▴ 290
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1
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1.3k
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limma - 2-color agilent microarray, GO annotation
Annotation GO annotate oligo Annotation GO annotate oligo
updated 14.1 years ago by ★ 13k • written 14.1 years ago by ▴ 290
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votes
1
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1.2k
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the procedure to annotate assembled transcriptom
annotate genomes annotate genomes
updated 14.3 years ago by 21k • written 14.3 years ago by ★ 2.0k
0
votes
0
replies
969
views
ChIPpeakAnno - for genes with multiple isoforms
Transcription Annotation annotate ChIPpeakAnno Transcription Annotation annotate
14.3 years ago Julie Zhu ★ 4.3k
0
votes
6
replies
2.6k
views
annotation package for platform GPL2890
Annotation annotate codelink Annotation annotate codelink
updated 14.4 years ago by ▴ 150 • written 14.4 years ago by ▴ 380
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votes
0
replies
768
views
using illuminaMousev2BeadID.bd
Annotation annotate Annotation annotate
14.4 years ago nac ▴ 280
0
votes
0
replies
1.4k
views
topTable (fit) annotation
Annotation GO Homo sapiens annotate limma GEOquery Annotation GO Homo sapiens annotate
14.4 years ago Jing Huang ▴ 380
0
votes
5
replies
2.5k
views
topTable (fit) annotation
GO annotate limma GO annotate limma
updated 14.4 years ago by 21k • written 14.4 years ago by ▴ 380
0
votes
2
replies
1.5k
views
affylmGUI annotations
Annotation annotate affylmGUI Annotation annotate affylmGUI
updated 14.5 years ago by ★ 2.0k • written 14.5 years ago by ▴ 30
0
votes
0
replies
927
views
chippeakanno related
Annotation annotate convert biomaRt bridge Annotation annotate convert biomaRt bridge
14.5 years ago Julie Zhu ★ 4.3k
0
votes
1
reply
1.2k
views
Chippeakanno venn
GO BSgenome annotate BSgenome GO BSgenome annotate BSgenome
updated 14.5 years ago by ★ 4.3k • written 14.5 years ago by ▴ 90
0
votes
2
replies
1.6k
views
Possible problem with Rhesus array annotation package
Annotation GO annotate annaffy Annotation GO annotate annaffy
updated 14.6 years ago by ★ 7.2k • written 14.6 years ago by ▴ 30
0
votes
0
replies
732
views
beadarray pre-processing - multi-probes per gene
annotate beadarray annotate beadarray
14.6 years ago Laurent David ▴ 10
0
votes
1
reply
1.2k
views
mirna20.db
miRNA Annotation annotate miRNA Annotation annotate
updated 14.6 years ago by ▴ 190 • written 14.6 years ago by ▴ 30
0
votes
2
replies
1.6k
views
Hypergeometric test in ChIPpeakAnno
annotate ChIPpeakAnno annotate ChIPpeakAnno
updated 14.6 years ago by ▴ 20 • written 14.6 years ago by ★ 4.3k
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votes
0
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1.1k
views
Information needed for ChIPpeakAnno package
annotate ChIPpeakAnno annotate ChIPpeakAnno
14.6 years ago Julie Zhu ★ 4.3k
0
votes
0
replies
948
views
ChIPpeakAnno
annotate IRanges ChIPpeakAnno annotate IRanges ChIPpeakAnno
14.7 years ago Julie Zhu ★ 4.3k
0
votes
1
reply
867
views
IRanges question!
annotate IRanges ChIPpeakAnno annotate IRanges ChIPpeakAnno
updated 14.7 years ago by ★ 11k • written 14.7 years ago by ▴ 290
0
votes
1
reply
1.4k
views
GenomicFeatures more detail.
SNP annotate GenomicFeatures SNP annotate GenomicFeatures
updated 14.7 years ago by ★ 6.8k • written 14.7 years ago by ▴ 970
0
votes
2
replies
1.6k
views
karyotype annotation
Clustering annotate quantsmooth Clustering annotate quantsmooth
updated 14.8 years ago by ▴ 550 • written 14.8 years ago by ▴ 30
0
votes
1
reply
1.3k
views
karyotype annotation
Clustering annotate Clustering annotate
updated 14.8 years ago by ▴ 550 • written 14.8 years ago by ▴ 30
0
votes
1
reply
2.5k
views
Can I know the number of genes in enriched GO category using GOseq
GO annotate Category goseq GO annotate Category goseq
updated 14.9 years ago by ▴ 40 • written 14.9 years ago by ▴ 150
0
votes
0
replies
953
views
Enriched GO questions
Annotation GO annotate PROcess Annotation GO annotate PROcess
15.0 years ago Julie Zhu ★ 4.3k
0
votes
1
reply
994
views
biomaRt: uniprot_mart
GO annotate biomaRt GO annotate biomaRt
updated 15.0 years ago by 68k • written 15.0 years ago by ▴ 10
0
votes
0
replies
1.1k
views
ChIPpeakAnno: using findOverlappingPeaks for non-overlapping peaks
GO annotate ChIPpeakAnno GO annotate ChIPpeakAnno
15.0 years ago Julie Zhu ★ 4.3k
0
votes
3
replies
1.6k
views
Need assistance with the file preparation for ChIPpeakAnno. (Jennifer Yang from University of California, Santa Barbara)
Annotation annotate ChIPpeakAnno Annotation annotate ChIPpeakAnno
15.1 years ago Julie Zhu ★ 4.3k
0
votes
0
replies
1.4k
views
Gene Name annotation with ChIPpeakAnno
Annotation AnnotationData annotate convert biomaRt Annotation AnnotationData annotate
15.1 years ago Julie Zhu ★ 4.3k
0
votes
0
replies
917
views
Gene Name annotation
Annotation annotate convert ChIPpeakAnno Annotation annotate convert ChIPpeakAnno
15.1 years ago Julie Zhu ★ 4.3k
0
votes
1
reply
1.6k
views
Using annotation package how can I convert the probe > ID's to Gene names.
Annotation GO probe annotate convert Annotation GO probe annotate convert
updated 15.1 years ago by ★ 1.3k • written 15.1 years ago by ▴ 90
0
votes
7
replies
2.5k
views
ChIPpeakAnno::getEnrichedGo crashes but I don't know why
annotate ChIPpeakAnno annotate ChIPpeakAnno
updated 15.1 years ago by ★ 4.3k • written 15.1 years ago by ▴ 40
0
votes
0
replies
941
views
romer in limma question
annotate limma annotate limma
15.2 years ago Gordon Smyth 53k
0
votes
3
replies
1.5k
views
strange ChIPpeakAnno and rtracklayer interaction.
GO annotate rtracklayer ChIPpeakAnno GO annotate rtracklayer ChIPpeakAnno
updated 15.3 years ago by ★ 11k • written 15.3 years ago by ▴ 20
0
votes
2
replies
1.5k
views
BioMaRt query
ath1121501 annotate ath1121501 annotate
updated 15.3 years ago by 68k • written 15.3 years ago by ▴ 80
0
votes
1
reply
1.2k
views
Agilent probenames and biomaRt
Annotation probe annotate biomaRt Annotation probe annotate biomaRt
updated 15.4 years ago by 68k • written 15.4 years ago by ▴ 60
0
votes
8
replies
2.6k
views
mouse SNPs
SNP Annotation GO HapMap annotate SNP Annotation GO HapMap annotate
15.4 years ago Glazko, Galina ▴ 350
0
votes
2
replies
1.4k
views
list of annaffy .db files?
Annotation annotate annaffy Annotation annotate annaffy
updated 15.4 years ago by 6.7k • written 15.4 years ago by ▴ 80
0
votes
1
reply
1.5k
views
biomaRt Error : Affy Human Exon array annotation
cdf annotate convert biomaRt cdf annotate convert biomaRt
updated 15.6 years ago by 68k • written 15.6 years ago by ▴ 260
0
votes
0
replies
1.5k
views
about lumi support for Illumina HT-12 v4
Annotation probe annotate lumi Annotation probe annotate lumi
15.6 years ago Pan Du ★ 1.2k
346 results • Page 3 of 7
Recent ...
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Comment: using limma trend workflow in CAMERA by Gordon Smyth 53k
No, `trend.var=TRUE` and `trend=TRUE` are not needed in any voom pipeline, because the trend is already incorporated into the voom weights.
Comment: Questions about bacon QC and correction on EWAS results by Tikaaa2sahaaaq2c • 0
In the world of mobile games, the 88ef game download has gained traction for its performance driven design [free download][1], similar to …
Comment: using limma trend workflow in CAMERA by A.Barden ▴ 20
Do you need to set trend.var=TRUE when using camera in the limma-voom pipeline with RNA-Seq data (as apposed to limma-trend pipeline)?
Comment: Upcoming Ensembl API and data access changes - new blog post available by Tikaaa2sahaaaq2c • 0
Just as the Ensembl team transitions to a new platform for streamlined data access, diners can benefit from a digital newks menu prices con…
Comment: Error message that there is no package called Biobase by DamionLedner99 • 0
thanks for sharing!!! https://cran.r-project.org/
Votes
Answer: What happens to genes with low dispersion during dispersion shrinkage in DESeq2
Comment: Are transformed values from rlog /vst log2 normalized counts?
Answer: Are transformed values from rlog /vst log2 normalized counts?
A: DESeq2 normalization vs VST vs rlog
Answer: How to directly decet the outlier samples (libraries) in EdgeR pipeline
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