Showing : annotate • reset
0
votes
1
reply
1.2k
views
get table with aanotaed genome features
Alignment annotate girafe Alignment annotate girafe
updated 15.6 years ago by ▴ 450 • written 15.6 years ago by ▴ 810
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4
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1.7k
views
error in function reduce from girafe
Annotation annotate biomaRt IRanges girafe Annotation annotate biomaRt IRanges girafe
updated 15.6 years ago by ▴ 450 • written 15.6 years ago by ▴ 810
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2
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1.5k
views
annotating lumi
Microarray Annotation Normalization probe annotate lumi Microarray Annotation probe lumi
updated 15.7 years ago by ▴ 80 • written 15.7 years ago by ▴ 90
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1
reply
786
views
help with affy annotation
annotate affy annotate affy
updated 15.8 years ago by 21k • written 15.8 years ago by ▴ 20
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votes
2
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1.2k
views
annotating reads acording with position on mapping
Annotation annotate biomaRt IRanges Annotation annotate biomaRt IRanges
updated 15.8 years ago by ▴ 450 • written 15.8 years ago by ▴ 810
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votes
2
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2.2k
views
lumi annotation using nuID, missing gene symbols
Annotation probe annotate lumi Annotation probe annotate lumi
updated 15.8 years ago by ★ 7.2k • written 15.8 years ago by ▴ 170
0
votes
1
reply
980
views
Illumina annotation
Microarray Annotation annotate Microarray Annotation annotate
updated 15.8 years ago by ★ 7.2k • written 15.8 years ago by ▴ 20
0
votes
3
replies
1.6k
views
annotation of affymetrix microarray data
annotate annaffy annotate annaffy
updated 15.8 years ago by 21k • written 15.8 years ago by ▴ 90
3
votes
1
reply
9.3k
views
Annotation for a GEO data set
Annotation annotate GEOquery Annotation annotate GEOquery
updated 15.9 years ago by 21k • written 16.0 years ago by ▴ 20
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votes
4
replies
1.6k
views
makePDpackage
probe annotate probe annotate
updated 16.0 years ago by ★ 4.3k • written 16.0 years ago by ▴ 380
0
votes
1
reply
1.4k
views
Is there anyway to map a set of EST id's to genBank accessions?
Annotation Homo sapiens annotate Annotation Homo sapiens annotate
updated 16.0 years ago by ▴ 610 • written 16.0 years ago by ▴ 10
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votes
2
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1.1k
views
problem with lumiRatAll.db
Annotation Cancer probe annotate lumi Annotation Cancer probe annotate lumi
updated 16.1 years ago by ▴ 300 • written 16.1 years ago by ▴ 20
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votes
3
replies
1.8k
views
GOHyperGResult in a data.frame, possible NAMESPACE problem?
GO Biobase annotate PROcess GOstats Category AnnotationDbi GO Biobase annotate PROcess
updated 16.1 years ago by ★ 7.4k • written 16.1 years ago by ★ 3.4k
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1
reply
1.7k
views
problem illumina annotation with lumi
Microarray annotate convert lumi Microarray annotate convert lumi
16.2 years ago Md.Mamunur Rashid ▴ 260
0
votes
1
reply
1.2k
views
KEGG2heatmap - blank rows
probe annotate probe annotate
updated 16.3 years ago by ▴ 400 • written 16.3 years ago by ▴ 480
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votes
2
replies
1.4k
views
cPlot
annotate annotate
updated 16.5 years ago by 25k • written 16.5 years ago by ▴ 480
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votes
5
replies
1.6k
views
chromosome ordering in cPlot()/cColor()
annotate annotate
updated 16.5 years ago by 25k • written 16.5 years ago by ★ 1.1k
0
votes
3
replies
1.3k
views
Is it possible to analyze GOs for lists of genes obtained from a "top-down" approach?
Microarray annotate Microarray annotate
updated 16.5 years ago by ★ 5.5k • written 16.5 years ago by ▴ 200
0
votes
7
replies
1.9k
views
Changes in annotations?
Annotation hgu133plus2 Biobase annotate Annotation hgu133plus2 Biobase annotate
16.6 years ago Alex Sanchez ▴ 90
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votes
2
replies
5.7k
views
Packages not getting installed
Microarray GO annotate Microarray GO annotate
updated 16.8 years ago by 68k • written 16.8 years ago by ▴ 90
0
votes
3
replies
6.6k
views
multiple ColSideColors-type annotations on a heatmap
Cancer annotate Cancer annotate
updated 16.8 years ago by ▴ 610 • written 16.8 years ago by ★ 1.1k
0
votes
5
replies
2.3k
views
annotate incompatible with RdbiPgSQL !?!
annotate geneplotter Rdbi RdbiPgSQL annotate geneplotter Rdbi RdbiPgSQL
updated 16.8 years ago by 68k • written 16.8 years ago by ▴ 160
0
votes
0
replies
941
views
Annotation and expression detection of Illumina microRNA expression prolifing panels
Annotation probe annotate microRNA Annotation probe annotate microRNA
17.1 years ago Jitao David Zhang ▴ 340
0
votes
1
reply
879
views
Applying bioconductor functions to files in different Windows directories
annotate affy annotate affy
updated 17.2 years ago by ★ 1.1k • written 17.2 years ago by ▴ 270
0
votes
4
replies
1.6k
views
Course material for "Using Bioconductor for ChIP-seq experiments"
Sequencing Cancer BSgenome annotate Biostrings BSgenome Sequencing Cancer BSgenome
updated 17.2 years ago by ▴ 10 • written 17.2 years ago by ★ 1.6k
0
votes
2
replies
2.1k
views
Can't load annotations with lumi
Microarray OneChannel Annotation Normalization probe Biobase annotate genefilter affy vsn
updated 17.2 years ago by ★ 1.2k • written 17.2 years ago by ▴ 280
0
votes
0
replies
1.1k
views
adding KEGG annotations with ABPkBuilder from E.coli
Annotation annotate AnnBuilder PROcess Category Annotation annotate AnnBuilder PROcess
17.3 years ago Marc Carlson ★ 7.2k
0
votes
4
replies
1.9k
views
CDF issue
Annotation Cancer cdf annotate affy Annotation Cancer cdf annotate affy
17.3 years ago Mathe, Ewy NIH/NCI [F] ▴ 40
0
votes
0
replies
773
views
BMP4 probe '1940386' missing in illuminaHumanv2BeadID.db (as compared to illuminaHumanv2ProbeID.db)
Annotation Cancer probe annotate Annotation Cancer probe annotate
17.3 years ago Julian Lee ▴ 140
0
votes
5
replies
1.7k
views
BMP4 probe '1940386' missing in illuminaHumanv2BeadID.db (as compared to illuminaHumanv2ProbeID.db)
Cancer annotate Cancer annotate
updated 17.3 years ago by ★ 7.2k • written 17.3 years ago by ▴ 140
0
votes
4
replies
2.9k
views
BSgenomes vs ENSEMBL
Transcription Annotation BSgenome annotate Biostrings BSgenome Transcription Annotation
updated 17.3 years ago by 16k • written 17.3 years ago by ★ 4.1k
0
votes
3
replies
1.4k
views
Missing function locuslinkQuery and locuslinkBYID in annotate 1.18.0
GO hgu95av2 Biobase annotate GO hgu95av2 Biobase annotate
updated 17.4 years ago by ★ 7.2k • written 17.4 years ago by ▴ 300
0
votes
1
reply
1.1k
views
Missing function locuslinkQuery and locuslinkBYID in annotate 1.18.0
GO hgu95av2 Biobase annotate GO hgu95av2 Biobase annotate
updated 17.4 years ago by ★ 7.2k • written 17.4 years ago by ▴ 300
0
votes
2
replies
1.5k
views
biomart doesn't annotate all the genes queried -CEACAM6
Cancer hgu133plus2 annotate affy biomaRt Cancer hgu133plus2 annotate affy biomaRt
17.4 years ago Julian Lee ▴ 140
0
votes
0
replies
861
views
Retrieve SNP annotation
SNP annotate SNP annotate
17.4 years ago Fabio Sanchez ▴ 10
0
votes
0
replies
1.5k
views
confusion about nomenclature of illumina annotationpackages
BiocViews Annotation Cancer Mus musculus illuminaHumanv1 illuminaHumanv2 probe annotate
17.6 years ago Lynn Amon ▴ 280
0
votes
1
reply
2.2k
views
confusion about nomenclature of illumina annotation packages
BiocViews annotate biocViews BiocViews BiocViews annotate biocViews
updated 17.6 years ago by ▴ 280 • written 17.6 years ago by ▴ 130
0
votes
3
replies
1.7k
views
Ringo: Error in preprocess() with R-2.7.0, but not with R-2.5.0
probe annotate geneplotter affy vsn Ringo probe annotate geneplotter affy vsn Ringo
updated 17.6 years ago by ▴ 730 • written 17.6 years ago by ▴ 110
0
votes
1
reply
1.5k
views
KEGG2heatmap genesymbols as row names?
Annotation GO annotate affy Annotation GO annotate affy
updated 17.6 years ago by ▴ 360 • written 17.6 years ago by ▴ 220
0
votes
0
replies
1.4k
views
affycoretools vennSelect problem
Annotation GO Survival probe annotate genefilter affy graph limma gcrma annaffy RBGL
17.6 years ago Nick Henriquez ▴ 20
0
votes
2
replies
1.6k
views
affycoretools vennSelect problem
GO Survival annotate genefilter affy graph gcrma annaffy RBGL GOstats biomaRt affyio
updated 17.7 years ago by 68k • written 17.7 years ago by ▴ 30
0
votes
2
replies
2.0k
views
new topGO results using GO.db very different from old ones using GO
GO annotate topGO BRAIN GO annotate topGO BRAIN
updated 17.8 years ago by ▴ 400 • written 17.8 years ago by ▴ 730
0
votes
0
replies
1.0k
views
ExpressionSet class and problems with phenotype and metadata matrices
Microarray Annotation Cancer hgu95av2 Biobase annotate affy Microarray Annotation Cancer
18.0 years ago Martin Morgan 25k
0
votes
2
replies
1.9k
views
biomaRt getBM errors
Annotation GO annotate AnnBuilder GOstats biomaRt Annotation GO annotate AnnBuilder
updated 18.2 years ago by 68k • written 18.2 years ago by ▴ 10
0
votes
4
replies
2.8k
views
Installing beadarray
annotate geneplotter beadarray AnnotationDbi annotate geneplotter beadarray AnnotationDbi
updated 18.3 years ago by 21k • written 18.3 years ago by ▴ 270
0
votes
0
replies
1.1k
views
AnnBuilder problem
Organism annotate AnnBuilder Organism annotate AnnBuilder
18.4 years ago Yihuan Xu ▴ 130
0
votes
1
reply
1.4k
views
combining data from two R arrays
GO Survival annotate genefilter vsn tilingArray GO Survival annotate genefilter vsn
18.4 years ago Richard Harrison ▴ 70
0
votes
4
replies
2.0k
views
running time of snapCGH processCGH and runDNAcopy
aCGH Survival CGH annotate genefilter affy DNAcopy aCGH GLAD tilingArray snapCGH aCGH
updated 18.4 years ago by ▴ 230 • written 18.4 years ago by ▴ 110
0
votes
2
replies
1.5k
views
AnnBuilder: problem with kegg url?
Annotation GO Organism annotate AnnBuilder Annotation GO Organism annotate AnnBuilder
updated 18.4 years ago by ★ 7.2k • written 18.4 years ago by ▴ 20
0
votes
2
replies
1.6k
views
Chromosome 23 and 24 dropped after run snapCGH processCGH
aCGH Survival Cancer annotate genefilter affy DNAcopy aCGH GLAD tilingArray snapCGH
updated 18.4 years ago by ▴ 40 • written 18.4 years ago by ▴ 110
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Comment: Deseq2 DE analysis of host-pathogen samples (model separately or jointly?) by a2a2ddrhaa • 0
For those taking a break from the lab, the CT777 Game download https://ct7777.pk/ offers a high-performance entry into online mobile gaming…
Answer: Subsetting data verses contrasts [DESeq2]? by ATpoint ★ 5.0k
This has been asked many times before, please search for relevant posts. In short: Generally it is least tedious to not split the data and …
Comment: Bulk RNAseq analysis for by Mariami • 0
Thank you so much for your help! will try to proceed with the suggestion
Comment: Bulk RNAseq analysis for by Mariami • 0
Thank you for the explanation. I understand, although at the moment we are limited in our ability to increase N. My concern came from the o…
Answer: Bulk RNAseq analysis for by Gordon Smyth 53k
All three packages allow paired comparisons, where the clone is the "pair". limma moreover allows mixed models (just run `voomLmFit` with `…
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Comment: Are transformed values from rlog /vst log2 normalized counts?
Are transformed values from rlog /vst log2 normalized counts?
Answer: Bulk RNAseq analysis for
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