Showing : annotate • reset
0
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2
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1.3k
views
gDNA Cy3, cDNA Cy5
Transcription Biobase annotate Transcription Biobase annotate
updated 18.4 years ago by ★ 13k • written 18.4 years ago by ▴ 270
0
votes
0
replies
1.4k
views
code for technical replicates in Limma with affy
Survival cdf annotate affy limma gcrma matchprobes affyio Survival cdf annotate affy
18.4 years ago Richard Friedman ★ 2.0k
0
votes
2
replies
1.7k
views
problem with probes2tableBM
Annotation GO Survival hgu133a2 annotate genefilter affy graph gcrma matchprobes GOstats
updated 18.4 years ago by ▴ 500 • written 18.4 years ago by ▴ 510
0
votes
4
replies
2.7k
views
disagreement between biomaRt and topGO
GO hgu133plus2 annotate geneplotter graph Rgraphviz PROcess goTools biomaRt Category GO
updated 18.5 years ago by ▴ 500 • written 18.5 years ago by ★ 1.4k
0
votes
7
replies
2.5k
views
problem with GOstats, developmental version?
GO Survival hgu95av2 annotate affy affydata graph Rgraphviz limma gcrma matchprobes GO
updated 18.5 years ago by ★ 7.4k • written 18.5 years ago by ★ 2.2k
0
votes
2
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1.5k
views
AnnBuilder problem
Organism annotate AnnBuilder Organism annotate AnnBuilder
updated 18.5 years ago by 25k • written 18.5 years ago by ▴ 130
0
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0
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1.3k
views
Pulling significant gene ids from beadarray data
Biobase annotate affy affyio beadarray quantsmooth beadarraySNP lumi Biobase annotate
18.5 years ago Johnstone, Alice ▴ 410
0
votes
1
reply
1.2k
views
Problems with lumiR/lumiMouseV1
Annotation lumiMouseV1 annotate lumi Annotation lumiMouseV1 annotate lumi
18.6 years ago • updated 18.5 years ago Cei Abreu-Goodger ▴ 830
0
votes
3
replies
1.8k
views
GO terms not found in goTools and GO
GO Biobase annotate goTools biomaRt GO Biobase annotate goTools biomaRt
updated 18.6 years ago by ★ 7.4k • written 18.6 years ago by ▴ 80
0
votes
1
reply
1.1k
views
AnnBuilder: ABPkgBuilder gives missing GO and NAs in ACCNUM
Annotation GO probe annotate AnnBuilder Annotation GO probe annotate AnnBuilder
updated 18.6 years ago by ★ 7.2k • written 18.6 years ago by ▴ 10
0
votes
5
replies
1.9k
views
Manufacturer ids in lumiHumanV1
Annotation lumiHumanV1 annotate lumi Annotation lumiHumanV1 annotate lumi
updated 18.6 years ago by ★ 1.2k • written 18.6 years ago by ▴ 830
0
votes
0
replies
1.2k
views
limma normalizeWithinArrays method="control"
Survival annotate genefilter limma Survival annotate genefilter limma
18.6 years ago Al Ivens ▴ 270
0
votes
1
reply
1.7k
views
snapCGH; export results of summarize.clones() function from aCGH
aCGH Survival Cancer Breast Biobase annotate genefilter geneplotter multtest limma aCGH
18.7 years ago Steven McKinney ▴ 310
0
votes
1
reply
864
views
Batch sequence retrieval
Cancer annotate Cancer annotate
updated 18.7 years ago by 21k • written 18.7 years ago by ★ 1.9k
0
votes
2
replies
1.6k
views
AnnotationDbi package only available for R 2.6.0 or higher version?
Annotation annotate AnnBuilder AnnotationDbi Annotation annotate AnnBuilder AnnotationDbi
updated 18.7 years ago by 21k • written 18.7 years ago by ▴ 450
0
votes
0
replies
1.2k
views
Fwd: limma gene symbol not avialable problem
Microarray Annotation Cancer cdf probe annotate affy affydata limma matchprobes affyio
18.7 years ago lidaof ▴ 450
0
votes
0
replies
1.1k
views
PFAM annotation from HyperG
Pathways annotate Category Pathways annotate Category
18.7 years ago Dario Greco ▴ 310
0
votes
4
replies
2.8k
views
smoothScatter axis limits
annotate geneplotter annotate geneplotter
updated 18.7 years ago by ★ 1.9k • written 18.7 years ago by ▴ 250
0
votes
0
replies
1.0k
views
Note in check report was: [Bioc-devel] Recent changes in R
Cancer annotate genefilter siggenes Cancer annotate genefilter siggenes
18.8 years ago Seth Falcon ★ 7.4k
0
votes
1
reply
1.1k
views
Re : bug with AnnBuilder and parser
annotate AnnBuilder annotate AnnBuilder
18.8 years ago Nianhua Li ▴ 870
0
votes
2
replies
1.5k
views
biomaRt, Error: ncol(result) == length(attributes) is not TRUE
Biobase annotate Rgraphviz biomaRt Biobase annotate Rgraphviz biomaRt
updated 18.8 years ago by ▴ 580 • written 18.8 years ago by ★ 1.4k
0
votes
1
reply
793
views
Anopheles annotation using limma2biomaRt: error with fldfilt option
annotate limma biomaRt annotate limma biomaRt
updated 18.8 years ago by 68k • written 18.8 years ago by ▴ 510
0
votes
0
replies
1.5k
views
RBGL: bfs & dfs with directed graphs
GO Biobase annotate geneplotter graph Rgraphviz annaffy RBGL convert GO Biobase graph
18.9 years ago stephen edwards ▴ 10
0
votes
1
reply
1.2k
views
Problems in AnnBuilder package function ABPkgBuilder
Annotation GO rat2302 probe Biobase annotate AnnBuilder PROcess Annotation GO rat2302
updated 18.9 years ago by ▴ 870 • written 18.9 years ago by ▴ 70
0
votes
3
replies
2.4k
views
Can't get RCurl...
GO Survival annotate genefilter affy graph limma GOstats biomaRt Category affycoretools
updated 18.9 years ago by 68k • written 18.9 years ago by ★ 2.2k
0
votes
2
replies
2.2k
views
"AveExp" column has dissappeared from limma topTable
GO Survival annotate geneplotter affydata limma annaffy affyPLM GO Survival annotate
updated 18.9 years ago by 53k • written 18.9 years ago by ▴ 680
0
votes
1
reply
1.4k
views
topTable "resort.by" broken...
GO Survival Biobase annotate genefilter affy affydata graph gcrma matchprobes annaffy
updated 18.9 years ago by 53k • written 18.9 years ago by ★ 2.2k
0
votes
1
reply
1.7k
views
question about limma2annaffy
GO Survival Biobase annotate genefilter geneplotter affy affydata graph limma annaffy
updated 18.9 years ago by 68k • written 18.9 years ago by ★ 2.2k
0
votes
0
replies
1.4k
views
affy u133x3p chip
Microarray Genetics GO Preprocessing Cancer CGH cdf probe annotate genefilter affy RBGL
18.9 years ago Dick Beyer ★ 1.4k
0
votes
0
replies
1.9k
views
Options for spatial normalization? (Oliver Homann)
SNP Microarray Annotation Normalization GO Classification Cancer annotate geneplotter SNP
19.0 years ago Tarca, Adi ▴ 570
0
votes
0
replies
4.9k
views
[R] object is not subsettable
GO Cancer annotate GO Cancer annotate
19.0 years ago Seth Falcon ★ 7.4k
0
votes
1
reply
1.4k
views
amigo links: gene ontology annotation for probes
Annotation GO Biobase annotate annaffy Annotation GO Biobase annotate annaffy
updated 19.0 years ago by ▴ 10 • written 19.0 years ago by ▴ 220
0
votes
8
replies
2.4k
views
oligo on R 2.4.1?
GO Survival annotate genefilter affy affydata matchprobes affyQCReport affyio oligo GO
updated 19.0 years ago by ★ 7.4k • written 19.0 years ago by ★ 2.2k
0
votes
4
replies
1.9k
views
error with AffyQCReport
cdf annotate affy limma RBGL simpleaffy GOstats affyQCReport cdf annotate affy limma
updated 19.0 years ago by ★ 13k • written 19.0 years ago by ▴ 830
0
votes
4
replies
2.4k
views
[R-SIG-Mac] Mac os x graphviz-Rgraphviz problem
Biobase annotate geneplotter graph Rgraphviz BUS Biobase annotate geneplotter graph BUS
updated 19.0 years ago by ★ 7.4k • written 19.1 years ago by ★ 6.5k
0
votes
0
replies
1.5k
views
Mac os x graphviz-Rgraphviz problem
Biobase annotate graph Rgraphviz BUS Biobase annotate graph Rgraphviz BUS
19.1 years ago Gavai, Anand ▴ 40
0
votes
1
reply
1.5k
views
annaffy errors
GO Survival mgu74av2 cdf annotate affy limma gcrma matchprobes annaffy simpleaffy plier
updated 19.1 years ago by 68k • written 19.1 years ago by ▴ 320
0
votes
3
replies
1.7k
views
GOstats hyperGTest question
Biobase annotate genefilter multtest graph Biobase annotate genefilter multtest graph
updated 19.1 years ago by ★ 7.4k • written 19.1 years ago by ▴ 80
0
votes
1
reply
977
views
about gene annotation
Microarray annotate Microarray annotate
updated 19.1 years ago by 68k • written 19.1 years ago by ▴ 160
0
votes
5
replies
2.3k
views
Rgraphviz problem
annotate graph Rgraphviz annotate graph Rgraphviz
updated 19.1 years ago by ★ 7.4k • written 19.1 years ago by ▴ 450
0
votes
6
replies
2.3k
views
GOstats and custom annotation problem
Annotation GO annotate genefilter graph AnnBuilder RBGL GOstats Category Annotation GO
updated 19.1 years ago by 21k • written 19.1 years ago by ▴ 310
0
votes
0
replies
1.5k
views
flagging spots in marray
aCGH Microarray Normalization GO Cancer Biobase annotate genefilter affy affydata limma
19.1 years ago Gordon Smyth 53k
0
votes
2
replies
2.0k
views
problem with hist.default in affystart in package affycoretools
GO cdf annotate affy limma RBGL simpleaffy GOstats Category affyQCReport affyio GO cdf
updated 19.2 years ago by 68k • written 19.2 years ago by ▴ 890
0
votes
2
replies
1.4k
views
2fold sigchanges from limma
GO Survival hgu133a2 annotate hexbin limma gcrma matchprobes annaffy GO Survival hexbin
updated 19.2 years ago by 53k • written 19.2 years ago by ▴ 60
0
votes
8
replies
2.8k
views
AnnBuilder and Kegg
Pathways GO Survival Cancer Organism annotate affydata vsn AnnBuilder globaltest GO vsn
updated 19.3 years ago by ▴ 190 • written 19.3 years ago by ★ 2.9k
0
votes
5
replies
2.3k
views
error coercing an exprSet to ExpressionSet
GO cdf Biobase annotate multtest affy limma RBGL GOstats Category affycoretools GO cdf
updated 19.3 years ago by ★ 7.4k • written 19.3 years ago by ▴ 890
0
votes
1
reply
1.5k
views
warning from make.cdf.package - FYI
GO Survival cdf Biobase annotate genefilter graph makecdfenv limma gcrma matchprobes GO
updated 19.3 years ago by 68k • written 19.3 years ago by ★ 2.2k
0
votes
5
replies
2.6k
views
Importing CDF file for custom array using makecdfenv
Microarray GO Survival Cancer cdf Biobase annotate genefilter affy graph makecdfenv GO
updated 19.3 years ago by ▴ 20 • written 19.3 years ago by ★ 2.2k
0
votes
0
replies
1.5k
views
problems with Affy vignette and affybatch objects
GO Survival cdf Biobase annotate genefilter multtest affy affydata graph limma gcrma
19.3 years ago Martin Morgan 25k
0
votes
4
replies
1.7k
views
problems with Affy vignette and affybatch objects
GO Survival cdf Biobase annotate genefilter multtest reposTools affy affydata graph GO
updated 19.3 years ago by 25k • written 19.3 years ago by ★ 2.2k
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Votes
A: Reference paper or resource for limma::diffSplice and edgeR::diffSpliceDGE metho
Answer: Which preprocessing steps are needed before running limpa?
Answer: Should I use beta1 from limpa::dpc() or limpa::dpcCN(), if they differ?
Answer: Which preprocessing steps are needed before running limpa?
Answer: Which preprocessing steps are needed before running limpa?
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