Bioconductor Annotationhubdata

Showing : annotationhubdata • reset

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1.1k

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tximeta AnnotationHub AnnotationHubData

16 months ago Thon • 0

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569

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exon AnnotationHubData

22 months ago mahima.g • 0

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1.5k

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GenomicFeatures AnnotationHubData tximeta

updated 2.5 years ago by Michael Love 43k • written 2.5 years ago by Pratik Mehta ▴ 10

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3.9k

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clusterProfiler AnnotationHubData GO

updated 2.8 years ago by Guido Hooiveld ★ 4.1k • written 2.8 years ago by Lucía ▴ 30

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1.5k

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AnnotationHubData PhyloProfile

2.8 years ago S.t ▴ 10

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3.7k

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AnnotationHubData AnnotationForge

2.9 years ago Saber_J ▴ 10

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807

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AnnotationHubData

updated 4.3 years ago by Kevin Blighe ★ 4.0k • written 4.3 years ago by Bogdan ▴ 670

7 results • Page 1 of 1

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Answer: Using tximport for kallisto aligned TOIL data by James W. MacDonald 68k

If you just have the transcript data, you probably don't need (and maybe cannot use) `tximport`. Instead you could just do the naive thing …

Answer: Reading gene expression data in GPR format and converting it to xlsx format by James W. MacDonald 68k

Setting aside the inadvisability of putting these data into Excel (and I should point out that these data are not single-cell, but instead …

Comment: concentration tables suitable as input for new packages? by wilkinson • 0

I am grateful for your response. Software such as "Spectra" may parse MS-data to generate tables of concentrations, for instance. But inste…

Comment: Removing UTR from GTF for gene quantification by ATpoint ★ 4.7k

Consider asking at biostars or bioinformatics reddit, since this is not directly related to a Bioconductor problem. Anyway, a couple of th…

Comment: Combining RNAseq and microarray data using edgeR/limma-voom by Hoover • 0

I got it! ([Drift Boss][1]) [1]: https://driftbossgame.co

Votes

Answer: Differential expression of proteins using somascan data

Answer: Surprising behavior for DEXseq dispersion estimate plot?

Answer: Handle zero effective gene length when tximport RSEM results

Handle zero effective gene length when tximport RSEM results

How to remove genes with 0 counts in tximport?

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Popular Question to Lluís Revilla Sancho ▴ 760