Bioconductor Annotationhubdata

Showing : annotationhubdata • reset

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1.1k

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tximeta AnnotationHub AnnotationHubData

17 months ago Thon • 0

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570

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exon AnnotationHubData

22 months ago mahima.g • 0

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1.5k

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GenomicFeatures AnnotationHubData tximeta

updated 2.5 years ago by Michael Love 43k • written 2.5 years ago by Pratik Mehta ▴ 10

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3.9k

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clusterProfiler AnnotationHubData GO

updated 2.8 years ago by Guido Hooiveld ★ 4.1k • written 2.8 years ago by Lucía ▴ 30

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1.5k

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AnnotationHubData PhyloProfile

2.8 years ago S.t ▴ 10

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3.7k

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AnnotationHubData AnnotationForge

2.9 years ago Saber_J ▴ 10

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808

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AnnotationHubData

updated 4.3 years ago by Kevin Blighe ★ 4.0k • written 4.3 years ago by Bogdan ▴ 670

7 results • Page 1 of 1

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Comment: Error in retrieving clinical data by silickas • 0

Thank you for the reply. I will try to do that next time. This time instead, I used the GenomicDataCommons package to download clinical dat…

Comment: deseq2 lfc shrinkage with few DEGs by Robert • 0

I'm dealing with a similar situation. I assume the coefficients related to batch effect would need to be included in idx also, is this corr…

Comment: [ChIP-seq] DESeq2 on counts matrix from union set of called peaks by Luca • 0

Thank you so much!! Yeah I had thought about this too, regarding the fact that DiffBind is a wrapper for counting peaks in this way in R di…

Comment: DESeq2 testing ratio of ratios (RIP-Seq, CLIP-Seq, ribosomal profiling) by aitor • 0

Hi everyone. I have a RIP-Seq analysis with 3 conditions and 3 assays (IP, IgG and Input for each of them). 4 replicates for each conditio…

Comment: Discrepancy between Excel TPP-TR reported values and the Melt Curve reported val by James W. MacDonald 68k

You will need to provide a self-contained example, or it is unlikely that anybody could debug any possible issue.

Votes

Answer: Limma - Complex 2-way multi-level contrast with paired samples

Answer: [ChIP-seq] DESeq2 on counts matrix from union set of called peaks

Help with creation of an OrgDB package and conduction of a bioinformatical analysis of gene expression

Answer: Loading Ensembl 98 EnsDb from Annotation Hub fails with database disk image malf

Answer: Differential expression of proteins using somascan data

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Popular Question to xiaofeiwang198266 • 0

Scholar to shepherl 4.1k

Popular Question to James W. MacDonald 68k