Showing : annotationhubdata • reset
1
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2
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1.6k
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AnnotationHub data for Mus musculus seems to be missing, while previously it was there
tximeta AnnotationHub AnnotationHubData
2.2 years ago Thon • 0
0
votes
0
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773
views
Getting the exon co-ordinates and location
exon AnnotationHubData
2.7 years ago mahima.g • 0
0
votes
2
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1.9k
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How to fix warning in makeTxDbFromGFF() when using Gencode M30 (mouse)?
GenomicFeatures AnnotationHubData tximeta
updated 3.3 years ago by 43k • written 3.3 years ago by ▴ 10
0
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13
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5.0k
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EnrichGO not working with db created from annotationhub
clusterProfiler AnnotationHubData GO
updated 3.7 years ago by ★ 4.1k • written 3.7 years ago by ▴ 30
3
votes
3
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1.7k
views
I can't run PhyloProfile
AnnotationHubData PhyloProfile
3.7 years ago S.t ▴ 10
3
votes
8
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4.4k
views
AnnotationForge::makeOrgPackage GO Ids mistake
AnnotationHubData AnnotationForge
3.7 years ago Saber_J ▴ 10
0
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1
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981
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a BioC/R package that display the genome sequence/ mRNA exons/protein domains
AnnotationHubData
updated 5.1 years ago by ★ 4.0k • written 5.1 years ago by ▴ 670
7 results • Page 1 of 1
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Comment: Joining different datasets and analyzing using the group-specific condition effe by jason.chai • 0
Thank you very much. I had read that and wondered if I used the recommendation in DESeq vignette, I would lose the pairing between groups? …
Comment: Questions about bacon QC and correction on EWAS results by sup0903 • 0
This is qq plot and histogram generated before bacon correction ![enter image description here][1] ![enter image description here][2] …
Comment: Ensembl site unresponsive via biomaRt by sebastianenewell • 0
> I think this is an unrelated issue. The original post includes the > message Error: 'curl_parse_url' is not an exported object from > 'na…
Comment: Development of MSstat workflow to analyze DIA time series data by Gordon Smyth 53k
Are there any other explanatory factors or covariates in your experiment other than time point? Do you have biological replicates at each t…
Answer: Question about the filterByExpr function inputs in edgeR by Gordon Smyth 53k
Either of these choices is perfectly acceptable from an edgeR analysis point of view, it is more to do with which is more relevant for your…
Votes
A: DESeq2: What is the unit of DESeq2 normalized read count (VST)? Is it tag per mi
Answer: Clarification on counting in Rsubread (featureCounts)
Comment: Clarification on counting in Rsubread (featureCounts)
C: ControlGenes/ housekeeping genes Deseq2
Answer: Clarification on counting in Rsubread (featureCounts)
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