Bioconductor Annotationhubdata

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tximeta AnnotationHub AnnotationHubData

24 months ago Thon • 0

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719

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exon AnnotationHubData

2.4 years ago mahima.g • 0

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1.7k

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GenomicFeatures AnnotationHubData tximeta

updated 3.1 years ago by Michael Love 43k • written 3.1 years ago by Pratik Mehta ▴ 10

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clusterProfiler AnnotationHubData GO

updated 3.4 years ago by Guido Hooiveld ★ 4.1k • written 3.4 years ago by Lucía ▴ 30

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1.6k

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AnnotationHubData PhyloProfile

3.4 years ago S.t ▴ 10

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4.2k

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AnnotationHubData AnnotationForge

3.5 years ago Saber_J ▴ 10

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907

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AnnotationHubData

updated 4.9 years ago by Kevin Blighe ★ 4.0k • written 4.9 years ago by Bogdan ▴ 670

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Comment: Help with defining groups by Phinney, Brett ▴ 10

I got it working , thank you!!!

Comment: Check removeBatchEffect effectiveness by massimo • 0

I would kindly ask for additional support. When not including the design_timepoint argument in removeBatchEffect and thus keeping the inter…

Comment: Error Loading Experiment from SimBenchData Package by ksankaran • 0

Aha, that was it! The object was class Seurat, but I didn't have it installed. After installing, everything works as expected.

Comment: Streamlining the computing time for MiloDE p-value correction in large dataset? by ATpoint ★ 5.0k

Is a method that is so computationally expensive really beneficial and necessary? You seem to have biological replication, don't you, so ps…

Answer: NA values for DESeq2 p-values and adjusted p-values using large sample sizes by ATpoint ★ 5.0k

Outliers without replacement, independent filtering or all-zero counts for that gene. That's the three options that trigger NAs https://bio…

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Comment: Check removeBatchEffect effectiveness

Gene expression associated with continuous (quantitative) traits (Limma/edgeR/correlation)

Answer: Error Loading Experiment from SimBenchData Package

Comment: incomplete imputation of missing values with LEA impute() function

Answer: Expected memory usage for analyzing large single-cell seq datasets (> 450,000 ce

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