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annotationhubdata
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1.4k
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AnnotationHub data for Mus musculus seems to be missing, while previously it was there
tximeta
AnnotationHub
AnnotationHubData
24 months ago
Thon
• 0
0
votes
0
replies
719
views
Getting the exon co-ordinates and location
exon
AnnotationHubData
2.4 years ago
mahima.g
• 0
0
votes
2
replies
1.7k
views
How to fix warning in makeTxDbFromGFF() when using Gencode M30 (mouse)?
GenomicFeatures
AnnotationHubData
tximeta
updated 3.1 years ago by
Michael Love
43k • written 3.1 years ago by
Pratik Mehta
▴ 10
0
votes
13
replies
4.5k
views
EnrichGO not working with db created from annotationhub
clusterProfiler
AnnotationHubData
GO
updated 3.4 years ago by
Guido Hooiveld
★ 4.1k • written 3.4 years ago by
Lucía
▴ 30
3
votes
3
replies
1.6k
views
I can't run PhyloProfile
AnnotationHubData
PhyloProfile
3.4 years ago
S.t
▴ 10
3
votes
8
replies
4.2k
views
AnnotationForge::makeOrgPackage GO Ids mistake
AnnotationHubData
AnnotationForge
3.5 years ago
Saber_J
▴ 10
0
votes
1
reply
907
views
a BioC/R package that display the genome sequence/ mRNA exons/protein domains
AnnotationHubData
updated 4.9 years ago by
Kevin Blighe
★ 4.0k • written 4.9 years ago by
Bogdan
▴ 670
7 results • Page
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Comment: Help with defining groups
by
Phinney, Brett
▴ 10
I got it working , thank you!!!
Comment: Check removeBatchEffect effectiveness
by
massimo
• 0
I would kindly ask for additional support. When not including the design_timepoint argument in removeBatchEffect and thus keeping the inter…
Comment: Error Loading Experiment from SimBenchData Package
by
ksankaran
• 0
Aha, that was it! The object was class Seurat, but I didn't have it installed. After installing, everything works as expected.
Comment: Streamlining the computing time for MiloDE p-value correction in large dataset?
by
ATpoint
★ 5.0k
Is a method that is so computationally expensive really beneficial and necessary? You seem to have biological replication, don't you, so ps…
Answer: NA values for DESeq2 p-values and adjusted p-values using large sample sizes
by
ATpoint
★ 5.0k
Outliers without replacement, independent filtering or all-zero counts for that gene. That's the three options that trigger NAs https://bio…
Votes
Comment: Check removeBatchEffect effectiveness
Gene expression associated with continuous (quantitative) traits (Limma/edgeR/correlation)
Answer: Error Loading Experiment from SimBenchData Package
Comment: incomplete imputation of missing values with LEA impute() function
Answer: Expected memory usage for analyzing large single-cell seq datasets (> 450,000 ce
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