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bioconductor archive news News

7.4 years ago Valerie Obenchain ★ 6.8k

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SNP biomart archive grch37

10.0 years ago mrprao • 0

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reproducibility archive source code

updated 9.4 years ago by Dan Tenenbaum ★ 8.2k • written 9.4 years ago by brucbruc • 0

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archive

updated 19 months ago by shepherl 4.1k • written 2.6 years ago by ems ▴ 20

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archive bioconductor

updated 17 months ago by shepherl 4.1k • written 2.5 years ago by Florian Finkernagel ▴ 30

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archive limma

3.1 years ago Jonathan • 0

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archive reproducibility

updated 9.3 years ago by Martin Morgan 25k • written 9.3 years ago by robert.bruccoleri ▴ 10

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Comment: Annotation package for Manduca sexta by GA ▴ 10

Thank you!

Comment: Improving performance of edgeR and limma while adjusting for multiple confounder by ATpoint ★ 4.8k

If 2 minutes is inacceptable to you then you can still fall back to limma-trend which should give a dramatic speedup and finish in seconds.…

Comment: getBM from biomaRt inconsistencies found with .gtf files across multiple species by Mike Smith ★ 6.6k

Great, thanks for the update from Ensembl. So the most relevant part of 'Location: Scaffold HG1277_PATCH: 137,021-141,806 forward strand' …

Answer: Improving performance of edgeR and limma while adjusting for multiple confounder by Gordon Smyth 52k

We recommend that you use voomLmFit() instead of voom+lmFit. We are pretty proud of the speed of glmQLFit and voom, and we hadn't expected…

Answer: Merging EPICV1 and V2 betas by James W. MacDonald 68k

It appears that [SeSAMe][1] has functions meant to do that sort of thing. [1]: https://bioconductor.org/packages/release/bioc/vignet…

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Looking for equivalent EPIC chip v1 vs. v2 annotation variables

Properly constructing a hypergeometric test

A: Is logFC a log2 fold change or some other base in scran::findMarkers

Comment: Error in retrieving clinical data

What is the cheapest day to fly on American Airlines? {Ask_Expert}

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