Log In
Sign Up
about
faq
Ask a question
Latest
News
Jobs
Tutorials
Tags
Users
New Post
Latest
News
Jobs
Tutorials
Tags
Users
Log In
Sign Up
About
Limit
all time
today
this week
this month
this year
Unanswered
All posts
Sort
Update
Answers
Bookmarks
Creation
Replies
Rank
Views
Votes
Showing :
arrayWeights
•
reset
16
votes
0
replies
3.8k
views
simultaneous use of robust and weighting methods in limma
limma
robust
arrayWeights
10.4 years ago • updated 8.0 years ago
Gordon Smyth
50k
7
votes
2
replies
2.2k
views
Appropriate explanation of the methodology behind arrayWeights function from limma R package
limma
arrayWeights
variance
sampleQuality
microarray
updated 8.6 years ago by
Ryan C. Thompson
★ 7.9k • written 8.6 years ago by
svlachavas
▴ 830
10
votes
4
replies
2.1k
views
limma-trend with random effects and/or array weights
limma-trend
duplicatecorrelation
arrayweights
limma
updated 6.7 years ago by
Gordon Smyth
50k • written 6.7 years ago by
maltethodberg
▴ 180
4
votes
8
replies
1.7k
views
Combination of duplicateCorrelation with arrayWeights to increase power for DE detection in multilevel experiments
limma
duplicatecorrelation
arrayweights
microarray
updated 8.6 years ago by
Gordon Smyth
50k • written 8.6 years ago by
svlachavas
▴ 830
4
votes
5
replies
1.6k
views
limma: genas + arrayweights = OK?
limma
genas
arrayweights
updated 8.7 years ago by
Gordon Smyth
50k • written 8.7 years ago by
Guido Hooiveld
★ 4.0k
2
votes
2
replies
1.5k
views
Correct use of arrayWeights alongside duplicateCorrelation for microarrays in Limma?
limma
duplicatecorrelation
arrayweights
8.6 years ago
willj
▴ 30
1
vote
2
replies
1.4k
views
limma normalization and arrayWeights fold change
limma
arrayweights
logfoldchange
neqc
normalization
updated 8.0 years ago by
svlachavas
▴ 830 • written 8.0 years ago by
merella.stefania
• 0
4
votes
1
reply
1.4k
views
simultaneous use of robust and weighting methods in limma.
limma
arrayweights
robust
updated 9.4 years ago by
Gordon Smyth
50k • written 10.4 years ago by
Richard Friedman
▴ 80
0
votes
1
reply
1.3k
views
Appropriate selection of DE list in limma before and after implementation of arrayWeights in conjuction with duplicateCorrelation functions
limma
microarray
multifactorial design
duplicatecorrelation
arrayweights
8.4 years ago
svlachavas
▴ 830
0
votes
1
reply
850
views
Illumina array weights--arrayWeights or beadCountWeights
limma
arrayweights
updated 6.6 years ago by
Gordon Smyth
50k • written 6.6 years ago by
johnmcma
▴ 10
10 results • Page
1 of 1
Recent ...
Replies
Comment: Numerical differences in DESeq2 output depending on different design matrix cons
by
JKim
• 0
The 1st model has an interaction term, but the 2nd model doesn't have the interaction term. That makes the difference.
Comment: Ensembl plants at annotationHub?
by
Daniele
• 0
Hi, I'm using Ensembl Plants release 59 with the IWGSC RefSeq v1.1 gene annotation. Thanks a lot for replying so quickly!
Comment: Numerical differences in DESeq2 output depending on different design matrix cons
by
swbarnes2
★ 1.4k
If you restrict yourself to, say, genes with a baseMean > 50, are the numerical differences between the two designs significant?
Comment: DESeq2- Mysterious interaction suppresses DEGs
by
shaunpeterson
• 0
The images I tried to attach didn't attach. Here is the PCA (MDS) of all the samples, with the Cortex outlier highlighed. ![enter image de…
Comment: STRINGdb : error with string_db$plot_network()
by
damian.szk
▴ 80
ok. Forcing non-secure protocol should not be needed anymore, due to changes in the underlying library. However, I will look at why "HTTP" …
Votes
Answer: Error while installing BiocManager::install("org.Vdahliae.eg.db")
Comment: How can I create a eigencorplot of pca created from deseq2 object with PCAtools
Answer: Importing a GraphNEL into Cytoscape with RCy3 with error: "Error in cyrestPUT(pa
Answer: Importing a GraphNEL into Cytoscape with RCy3 with error: "Error in cyrestPUT(pa
Rsubread counting peaks ATACseq
Awards
• All
Popular Question
to
Vincent J. Carey, Jr.
6.7k
Popular Question
to
Koen Van den Berge
▴ 180
Popular Question
to
shepherl
3.9k
Popular Question
to
Ken C
• 0
Popular Question
to
Johannes Rainer
★ 2.0k
Locations
• All
WEHI, Melbourne, Australia,
17 minutes ago
India,
1 hour ago
Greece,
1 hour ago
Poland,
2 hours ago
United States,
2 hours ago
Traffic: 437 users visited in the last hour
Content
Search
Users
Tags
Badges
Help
About
FAQ
Access
RSS
API
Stats
Use of this site constitutes acceptance of our
User Agreement and Privacy Policy
.
Powered by the
version 2.3.6