Bioconductor Variance

Showing : variance • reset

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1.5k

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supervised edgeR variance RNASeq heatmaps

updated 7 months ago by Gordon Smyth 48k • written 9 months ago by mohammedtoufiq91 ▴ 10

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792

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limma treatment variance

updated 3.7 years ago by Gordon Smyth 48k • written 3.7 years ago by ML18 ▴ 10

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658

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deseq2 vst variance

updated 4.3 years ago by Michael Love 40k • written 4.3 years ago by Bitao Qiu • 0

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1.1k

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variance formula expression

updated 4.7 years ago by mikhael.manurung ▴ 270 • written 4.7 years ago by rina ▴ 20

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715

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deseq2 variance genes

updated 5.8 years ago by Michael Love 40k • written 5.8 years ago by hs.lansdell ▴ 20

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5.5k

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deseq2 counts DESeqtransform variance deviation

updated 5.9 years ago by Michael Love 40k • written 5.9 years ago by Casper van Mourik • 0

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1.3k

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deseq2 variance lrt differential gene expression

updated 6.5 years ago by Ryan C. Thompson 7.8k • written 6.5 years ago by rclaire ▴ 20

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1.3k

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pca variance deseq2 gene_id

updated 7.3 years ago by Michael Love 40k • written 7.3 years ago by NMostajo ▴ 10

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2.0k

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limma arrayWeights variance sampleQuality microarray

updated 7.9 years ago by Ryan C. Thompson 7.8k • written 8.0 years ago by svlachavas ▴ 810

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Comment: Speeding up of DelayedArray::write_block() by Hervé Pagès 16k

> I don't know the details but do you mean using HDF5RealizationSink or TENxRealizationSink will make it possible to writing sparse multi-d…

Comment: DMRcate design by Jitendra ▴ 10

Thanks James, do I also need to mention 'contrasts=FALSE' in cpg.annotate.And also what to mentions in analysis.type="differential",/ "ANO…

Comment: Speeding up of DelayedArray::write_block() by Koki ▴ 10

I don't know the details but do you mean using `HDF5RealizationSink` or `TENxRealizationSink` will make it possible to writing sparse multi…

Comment: DelayedArray::read_sparse_block by Koki ▴ 10

Ok, I understood. How about "writing" to HDF5? Are you going to implement `write_block_as_sparse` in `SparseArray` package?

Comment: DelayedArray::read_sparse_block by Hervé Pagès 16k

> So do you means the specification change from DelayedArray's read_sparse_block to SparseArray's read_block_as_sparse will accelerate the …

Votes

Steps needed to change design (relevel factors) in DESeq2

Answer: DMRcate design

Comment: DMRcate design

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