Showing : arrays • reset
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Illumina global SNP screeing array
illuminaHumanv3.db arrays
2.5 years ago DH • 0
1
vote
1
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1.1k
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Weight Array Quality before of after applying variance filtering?
limma arrays genefilter
updated 3.4 years ago by 68k • written 3.4 years ago by ▴ 40
3
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5
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2.5k
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Use of arrayWeights with two treatment groups
Microarray arrays limma MicroarrayData
updated 4.4 years ago by 53k • written 4.5 years ago by • 0
1
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1
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2.1k
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How do I adjust for other factors in Limma differential expression analysis?
limma Microarray MicroarrayData arrays
updated 4.5 years ago by ★ 4.0k • written 4.5 years ago by • 0
2
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2
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1.5k
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limma - removing samples?
ArrayExpress limma arrays
4.5 years ago RMP87 • 0
0
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2
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2.8k
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Beyond dmpFinder for methylation analysis, using limma for covariates
minfiDataEPIC arrays limma minfi Epigenetics
updated 5.0 years ago by 53k • written 5.0 years ago by ▴ 20
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3.9k
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rhdf5 package and arrays in R
array R rhdf5 arrays h5
updated 10.8 years ago by ▴ 180 • written 10.8 years ago by • 0
7 results • Page 1 of 1
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Replies
Comment: Highly similar RNA-seq samples in PCA - pooling or technical duplication? by Ahmed Salah • 0
Thank you very much! will take that into consideration
Comment: Large logFC but somewhat high FDR by JKim • 0
Thank you very much for taking the time to answer the question. I really appreciate your insights and comments.
Comment: upstream git branches of bioc-release by Jeroen ▴ 10
OK I have updated https://bioc-release.r-universe.dev accordingly. Let me know if you find version differences when mirroring binaries.
Comment: Large logFC but somewhat high FDR by Gordon Smyth 53k
I don't know what `tp1` is. The relevant histogram would be: ``` hist(fit2$p.value[,"KO_vs_WT"]) ```
Answer: p.adjust BH Question by Gordon Smyth 53k
Duplicate of https://support.bioconductor.org/p/41077/
Votes
Comment: Highly similar RNA-seq samples in PCA - pooling or technical duplication?
Answer: Large logFC but somewhat high FDR
Comment: upstream git branches of bioc-release
Comment: upstream git branches of bioc-release
Comment: upstream git branches of bioc-release
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