Bioconductor Arrays

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924

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illuminaHumanv3.db arrays

2.2 years ago DH • 0

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987

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limma arrays genefilter

updated 3.1 years ago by James W. MacDonald 68k • written 3.1 years ago by jacorvar ▴ 40

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2.3k

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Microarray arrays limma MicroarrayData

updated 4.1 years ago by Gordon Smyth 52k • written 4.2 years ago by Emma • 0

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2.0k

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limma Microarray MicroarrayData arrays

updated 4.3 years ago by Kevin Blighe ★ 4.0k • written 4.3 years ago by Emma • 0

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1.4k

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ArrayExpress limma arrays

4.3 years ago RMP87 • 0

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2.7k

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minfiDataEPIC arrays limma minfi Epigenetics

updated 4.7 years ago by Gordon Smyth 52k • written 4.7 years ago by Jeff ▴ 20

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3.7k

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array R rhdf5 arrays h5

updated 10.5 years ago by Nathaniel Hayden ▴ 180 • written 10.5 years ago by FabioF • 0

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Comment: EuroBioC2024 abstract submission is open! by rajilrfaze • 0

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Comment: p-adjusted values in multiple comparisons by ocanorocabayera • 0

Thank you Gordon for your thorough reply. It seems when MDS-plotting the obtained object from 'voom', that the points do not cluster togeth…

Comment: Are voomByGroup and voomLmFit compatible? by Gordon Smyth 52k

Not sure what "points" you are referring to, or what you mean by them being "weighted".

Answer: p-adjusted values in multiple comparisons by Gordon Smyth 52k

If your data was completely random, with no truly differentially expressed (DE) genes, then you would expect to get nearly 5% of the p-valu…

Answer: Are voomByGroup and voomLmFit compatible? by Gordon Smyth 52k

voomByGroup isn't part of Bioconductor, so questions about it should be send to the voomByGroup issues page. I haven't brought voomByGroup…

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Answer: p-adjusted values in multiple comparisons

Comment: Very different log2 Fold changes with DESeq2 and explict calculation

Answer: (Why) do limma's confidence intervals depend on topTable's p.value argument?

Answer: Very different log2 Fold changes with DESeq2 and explict calculation

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