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arrays
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Illumina global SNP screeing array
illuminaHumanv3.db
arrays
11 months ago
DH
• 0
1
vote
1
reply
669
views
Weight Array Quality before of after applying variance filtering?
limma
arrays
genefilter
updated 22 months ago by
James W. MacDonald
65k • written 22 months ago by
jacorvar
▴ 40
3
votes
5
replies
1.6k
views
Use of arrayWeights with two treatment groups
Microarray
arrays
limma
MicroarrayData
updated 2.8 years ago by
Gordon Smyth
50k • written 2.9 years ago by
Emma
• 0
1
vote
1
reply
1.3k
views
How do I adjust for other factors in Limma differential expression analysis?
limma
Microarray
MicroarrayData
arrays
updated 3.0 years ago by
Kevin Blighe
★ 3.9k • written 3.0 years ago by
Emma
• 0
2
votes
2
replies
1.0k
views
limma - removing samples?
ArrayExpress
limma
arrays
3.0 years ago
RMP87
• 0
0
votes
2
replies
1.7k
views
Beyond dmpFinder for methylation analysis, using limma for covariates
minfiDataEPIC
arrays
limma
minfi
Epigenetics
updated 3.5 years ago by
Gordon Smyth
50k • written 3.5 years ago by
Jeff
▴ 20
0
votes
6
replies
3.1k
views
rhdf5 package and arrays in R
array
R
rhdf5
arrays
h5
updated 9.2 years ago by
Nathaniel Hayden
▴ 180 • written 9.2 years ago by
FabioF
• 0
7 results • Page
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Comment: Timecourse RNASeq analysis
by
Aurora
• 0
I managed to run ImpulseDE2 as I am interested in getting significant gene changes over time. Now I would like to run deseq as well and com…
Comment: Once again a "Model matrix not full rank"
by
arfranco
▴ 130
But.. How to run a temporal assay?
Comment: Deseq2 and Normalization of RNA sequencing data
by
kcarey
• 0
Noise in terms of expression...to make sure that the information reported is not due to artifacts and actually expression. When I had FPKM …
Answer: NEED FOR NESSASORY HELP
by
Gordon Smyth
50k
Is this quesion related to your earlier question? https://support.bioconductor.org/p/9157127/ If you've already done an edgeR analysis, yo…
Answer: Gene-by-sample covariates in limma
by
Gordon Smyth
50k
Your first method would be valid if, instead of taking ratios, you instead used the differences between the log-transformed 13C and 12C int…
Votes
Bioconductor 3.19 is Released!
A: Error in DESeqDataSet : some values in assay are not integers
Bioconductor 3.19 is Released!
Bioconductor 3.19 is Released!
Answer: DEseq2 coefficient
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