Showing : assign • reset
0
votes
3
replies
1.0k
views
gcrma problem
Microarray Cancer probe gcrma ASSIGN Microarray Cancer probe gcrma ASSIGN
updated 19.1 years ago by 65k • written 19.1 years ago by ▴ 120
0
votes
3
replies
2.5k
views
heatmap.2
ASSIGN ASSIGN
updated 15.4 years ago by 21k • written 15.4 years ago by ▴ 10
0
votes
3
replies
1.4k
views
LimmaGUI Error
Normalization GO limmaGUI ASSIGN Normalization GO limmaGUI ASSIGN
18.8 years ago Brooke-Powell, Elizabeth ▴ 170
0
votes
3
replies
1.0k
views
comparing data frames
affy ASSIGN affy ASSIGN
updated 20.0 years ago by ★ 1.8k • written 20.0 years ago by ▴ 300
0
votes
5
replies
1.9k
views
Question regarding cellhts2 output
Normalization Visualization PROcess cellHTS2 ASSIGN Normalization Visualization PROcess
11.1 years ago maziz@tgen.org ▴ 70
0
votes
4
replies
1.5k
views
edgeR: design matrix
ASSIGN ASSIGN
updated 11.9 years ago by 50k • written 12.0 years ago by ▴ 420
0
votes
3
replies
1.3k
views
working with two factors in DESeq to analyze RNA-seq
DESeq ASSIGN DESeq ASSIGN
updated 13.2 years ago by 50k • written 13.2 years ago by ▴ 150
0
votes
3
replies
992
views
HTqPCR and limma and factorial design with no replicates
Microarray qPCR Classification limma HTqPCR ASSIGN Microarray qPCR Classification limma
updated 14.3 years ago by ★ 6.0k • written 14.3 years ago by ▴ 810
0
votes
11
replies
1.8k
views
...another question about using weights on microarray analysis
Microarray limma ASSIGN Microarray limma ASSIGN
15.2 years ago Erika Melissari ▴ 250
0
votes
8
replies
3.1k
views
Annotation files for bacterial genome RNAseq
Alignment Annotation ASSIGN Alignment Annotation ASSIGN
updated 9.9 years ago by 65k • written 9.9 years ago by ▴ 80
0
votes
2
replies
770
views
modify CDF file for array study
cdf probe affy ASSIGN cdf probe affy ASSIGN
updated 16.5 years ago by ▴ 120 • written 16.5 years ago by ▴ 10
0
votes
4
replies
1.5k
views
problem in reading bam files with EDASeq
Rsamtools EDASeq ASSIGN Rsamtools EDASeq ASSIGN
updated 12.3 years ago by ▴ 950 • written 12.3 years ago by ▴ 500
0
votes
8
replies
2.9k
views
biomaRt - batch query for chromosome location to gene identifier?
biomaRt ASSIGN biomaRt ASSIGN
updated 13.5 years ago by 6.7k • written 13.5 years ago by ▴ 120
0
votes
2
replies
1.3k
views
error/problem with biomaRt gene symbol query
Microarray Cancer probe biomaRt ASSIGN Microarray Cancer probe biomaRt ASSIGN
updated 13.8 years ago by ▴ 500 • written 13.8 years ago by ▴ 100
0
votes
2
replies
849
views
spot weight in limma
oligo ASSIGN oligo ASSIGN
19.5 years ago Ren Na ▴ 250
0
votes
4
replies
3.5k
views
edgeR : input and design matrix help
edgeR ASSIGN edgeR ASSIGN
12.0 years ago KJ Lim ▴ 420
0
votes
2
replies
955
views
Creating a customized cut flow with the affy/limma packages
GO limma ASSIGN GO limma ASSIGN
updated 12.2 years ago by 65k • written 12.2 years ago by ▴ 20
0
votes
12
replies
2.1k
views
Newbie methylation and stats question
probe ASSIGN probe ASSIGN
updated 11.9 years ago by ★ 4.2k • written 11.9 years ago by ▴ 440
0
votes
4
replies
1.5k
views
GenomicRanges select parameter
GenomicRanges ASSIGN GenomicRanges ASSIGN
updated 9.9 years ago by ▴ 30 • written 9.9 years ago by ★ 11k
0
votes
5
replies
4.3k
views
annotating microarray data with mogene10stv1
Microarray Annotation annotate limma ASSIGN Microarray Annotation annotate limma ASSIGN
updated 9.8 years ago by 65k • written 9.8 years ago by ▴ 70
0
votes
3
replies
1.2k
views
mogene10stprobeset.db error
Normalization ASSIGN Normalization ASSIGN
updated 13.8 years ago by 6.7k • written 13.8 years ago by ▴ 170
0
votes
2
replies
954
views
Limma and limmaGUI with Imagene files, problems/bugs report
limma limmaGUI ASSIGN limma limmaGUI ASSIGN
updated 19.4 years ago by 50k • written 19.4 years ago by ▴ 50
0
votes
2
replies
1.2k
views
DEseq
ASSIGN ASSIGN
updated 12.2 years ago by ★ 6.0k • written 12.3 years ago by ▴ 30
0
votes
2
replies
1.0k
views
LIMMA: how to assign file name
limma ASSIGN limma ASSIGN
updated 5.3 years ago by 0 • written 19.0 years ago by ▴ 180
0
votes
2
replies
1.5k
views
Limma: Extract genes from decideTests result
limma ASSIGN limma ASSIGN
updated 18.2 years ago by ▴ 100 • written 18.2 years ago by ▴ 360
1
vote
3
replies
1.3k
views
Limma and Names Assignment
ASSIGN ASSIGN
written 12.6 years ago by ▴ 760
0
votes
11
replies
3.5k
views
SNP6 data to VCF
SNP oligo ASSIGN SNP oligo ASSIGN
updated 5.7 years ago by • 0 • written 12.2 years ago by 21k
0
votes
2
replies
1.4k
views
Question regarding cellhts2 output
Normalization cellHTS2 ASSIGN Normalization cellHTS2 ASSIGN
11.8 years ago maziz@tgen.org ▴ 70
0
votes
3
replies
1.1k
views
Integrating Codelink data with bioconductor (using affy and limmafunctions)
Microarray Annotation Normalization affy limma PROcess codelink ASSIGN Microarray affy
updated 19.0 years ago by ▴ 760 • written 19.0 years ago by 50k
0
votes
1
reply
3.6k
views
how deal with multiplicate affy probes?
Alignment mgu74av2 probe affy ASSIGN Alignment mgu74av2 probe affy ASSIGN
updated 20.0 years ago by ★ 5.5k • written 20.0 years ago by ▴ 50
0
votes
1
reply
1.3k
views
Bootstrapping paired samples and tiny groups
ASSIGN ASSIGN
updated 13.6 years ago by ★ 6.0k • written 13.7 years ago by ▴ 830
0
votes
1
reply
778
views
single channel analysis
Annotation Normalization limma ASSIGN Annotation Normalization limma ASSIGN
updated 14.0 years ago by ▴ 860 • written 14.0 years ago by ▴ 720
0
votes
2
replies
978
views
single channel analysis
Annotation ASSIGN Annotation ASSIGN
updated 14.0 years ago by 65k • written 14.0 years ago by ▴ 860
0
votes
1
reply
1.2k
views
loop over IRanges spaces
Coverage convert rtracklayer ASSIGN Coverage convert rtracklayer ASSIGN
updated 14.0 years ago by ★ 11k • written 14.0 years ago by ▴ 60
0
votes
1
reply
634
views
Please help: AffylmGUI errors
Microarray affylmGUI ASSIGN Microarray affylmGUI ASSIGN
updated 19.2 years ago by ★ 7.4k • written 19.2 years ago by ▴ 30
0
votes
2
replies
972
views
gene classification problem
GO affy ASSIGN GO affy ASSIGN
updated 19.4 years ago by ▴ 290 • written 19.4 years ago by ▴ 890
0
votes
1
reply
1.5k
views
Seeking assistance on ROC
Microarray GO Classification ROC graph ASSIGN Microarray GO Classification ROC graph
updated 14.3 years ago by ★ 13k • written 14.3 years ago by 21k
0
votes
1
reply
908
views
Multiple genes per probeset
Annotation Cancer mouse4302 annaffy ASSIGN Annotation Cancer mouse4302 annaffy ASSIGN
updated 14.0 years ago by 65k • written 14.0 years ago by ★ 2.0k
0
votes
3
replies
1.3k
views
Question about clustering and cluster validation
ASSIGN ASSIGN
updated 13.5 years ago by ▴ 20 • written 13.5 years ago by ▴ 370
0
votes
3
replies
1.7k
views
Fwd: Re: which package can do GSEA for no model organism
Annotation GO Organism ASSIGN Annotation GO Organism ASSIGN
updated 14.9 years ago by ▴ 40 • written 14.9 years ago by ▴ 340
0
votes
2
replies
2.0k
views
Outputting dendrogram with large numbers of genes without losing resolution
ASSIGN ASSIGN
updated 16.8 years ago by 21k • written 16.8 years ago by ▴ 40
0
votes
2
replies
892
views
How to permute the CEL files
ASSIGN ASSIGN
updated 14.9 years ago by 25k • written 14.9 years ago by ▴ 840
0
votes
1
reply
1.3k
views
Changes in siggenes?
Prostate hgu133a2 probe affy siggenes ASSIGN Prostate hgu133a2 probe affy siggenes
updated 14.3 years ago by ▴ 900 • written 14.3 years ago by ▴ 10
0
votes
1
reply
976
views
Array normalisation with Limma: would this be reasonable?
ASSIGN ASSIGN
17.4 years ago J.delasHeras@ed.ac.uk ★ 1.9k
0
votes
1
reply
933
views
Re: order in affy for R
probe affy ASSIGN probe affy ASSIGN
updated 21.9 years ago by ▴ 640 • written 21.9 years ago by ★ 2.3k
0
votes
1
reply
1.3k
views
simpleaffy 2.14.02, setQCEnvironment
cdf simpleaffy ASSIGN cdf simpleaffy ASSIGN
updated 16.6 years ago by ★ 1.1k • written 16.6 years ago by ▴ 50
0
votes
2
replies
966
views
Single Channel Approach for Agilent Arrays
limma ASSIGN limma ASSIGN
updated 17.6 years ago by ★ 6.0k • written 17.6 years ago by ▴ 100
0
votes
1
reply
1.6k
views
Problems with url/download and http_proxy
Biobase annotate edd geneplotter tkWidgets ASSIGN Biobase annotate edd geneplotter
updated 21.9 years ago by ▴ 50 • written 21.9 years ago by ▴ 460
0
votes
1
reply
786
views
mean of individual rows for subsets of columns in an ExprSet
ASSIGN ASSIGN
updated 20.7 years ago by 6.7k • written 20.7 years ago by ▴ 280
0
votes
1
reply
815
views
[R-SIG-Mac] trouble running Bioconductor
limma BUS ASSIGN limma BUS ASSIGN
updated 17.7 years ago by ★ 7.4k • written 17.7 years ago by ▴ 430
50 results • Page 1 of 1
Recent ...
Replies
Answer: How to use bootRanges to bootstrap small RNA loci (nullranges package) by Poonam • 0
Hi Michael, I think there is something wrong with the generation of nullranges. I was working with small RNA and methylation overlaps. …
Answer: Once again a "Model matrix not full rank" by swbarnes2 ★ 1.3k
Replicate numbers, like the 1 in control_1 are fine in sample names, but never add them to anything else in colData. From the computer's p…
Answer: limma Intercept vs No-intercept models completely changing DMR results? by Gordon Smyth 50k
I'll add a little bit of general advice to James' answer. You seem to have the misunderstanding that you can change the design matrix but …
Answer: package goseq seems to be not available on the latest version of R by Gordon Smyth 50k
It is true that goseq isn't available for Bioc 3.19 (as at 4 May 2024). In the meantime, you could consider using the goana() and kegga() …
Answer: limma Intercept vs No-intercept models completely changing DMR results? by James W. MacDonald 65k
This part: ``` design_intercept <- model.matrix(~Alt+Sex+Age+PC1, data=targets_Sherpa) colnames(design_intercept) <- c("AltSHP_LA","Al…
Votes
Answer: Why does GSEA on edgeR results for randomized samples give highly significant p-
Answer: limma Intercept vs No-intercept models completely changing DMR results?
Answer: CombineArrays for EPIC and EPIC V2
Answer: Too many significant genes when integrating gtex and tcga
Comment: Too many significant genes when integrating gtex and tcga
Awards • All
Popular Question to Gordon Smyth 50k
Popular Question to Zainab • 0
Popular Question to Theo ▴ 10
Popular Question to gene_bioconductor ▴ 10
Popular Question to rohitsatyam102 ▴ 20
Locations • All
France, 10 minutes ago
United States, 11 minutes ago
WEHI, Melbourne, Australia, 24 minutes ago
United States, 31 minutes ago
Morocco, 37 minutes ago
Traffic: 692 users visited in the last hour
Content Search
Users
Tags
Badges
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6