Showing : batch effects • reset
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full confounding between batch and treatment effects
batch effects limma batch-correction RNAseq RUVseq
updated 4.0 years ago by 65k • written 4.0 years ago by • 0
1
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1
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1.8k
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Adjusting batch effects in microarray expression data using empirical Bayes methods
ComBat microarray batch effects
updated 6.8 years ago by 65k • written 6.8 years ago by ▴ 10
1
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8
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1.3k
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Code to address batch effect in total number of reads/ sample for DEG using Ballgown
differential expression analysis ballgown r batch effects total number of reads
updated 5.6 years ago by 65k • written 5.6 years ago by • 0
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879
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DEG among experimental and control group in MAST
MAST DEG batch effects
4.6 years ago chendianyu • 0
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1.9k
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adjusting for batch using ComBat (sva) - singularity error
microarray combat sva batch effects
4.3 years ago anne.bozack • 0
0
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3
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842
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Problem with including batch effects in linear model in LIMMA- samples are removed
limma batch effects linear model
updated 4.2 years ago by 65k • written 4.2 years ago by ▴ 20
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685
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adding batch effects as a covariate in additive model in edgeR
edger batch effects
updated 4.8 years ago by 65k • written 4.8 years ago by • 0
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0
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1.2k
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Batch correction with uncertain biological variables
sva svaseq batch effect batch effects batch effect correction
6.7 years ago vedran.franke • 0
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Controlling for batch and estrus cycle using DESeq2 in RNA-seq analysis
deseq2 random effects batch effects RNA-seq rna-seq
updated 6.8 years ago by 41k • written 6.8 years ago by • 0
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Comment: fgsea significant result by Chris • 0
Thanks ATpoint! Setting a fixed seed can reproduce the same result. However, if someone else analyze the same data with different seed, the…
Comment: SGSeq: moving toward diffex from SGSeq analysis by Sara • 0
Thank you for your response. I have another question about saving the sgvc result as a CSV file. I would appreciate your help, please. ``` …
Comment: How to use bootRanges to bootstrap small RNA loci (nullranges package) by Poonam • 0
I tried different block lengths first and considered 100000 to be ideal because of the almost similar inter-range distance. S1= bootRange…
Comment: How to use bootRanges to bootstrap small RNA loci (nullranges package) by Michael Love 41k
The segmentation and block length are key parameters. We recommend for example blocks of length ~500kb. It would help if you would post yo…
Answer: Handling multiple differential expression comparisons by Michael Love 41k
It's typical that results are presented with each group having its own FDR control. So presenting each comparison with the adjusted p-va…
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Answer: fgsea significant result
Answer: fgsea significant result
package goseq seems to be not available on the latest version of R
package goseq seems to be not available on the latest version of R
Print Differentially Expressed Exons From Dexseq Results
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