5
votes
9
replies
12k
views
2
votes
3
replies
3.6k
views
0
votes
0
replies
1.4k
views
1
vote
1
reply
2.3k
views
0
votes
4
replies
1.8k
views
8.4 years ago
bioinf
▴
10
2
votes
7
replies
3.0k
views
Recent ...
Replies
Comment: Best practice for handling large data (matrix with >2^31-1 non-zero elements) in
by
James W. MacDonald
68k
Aaron already answered your question. If you have an HDF5 file, it will be read in as a `TENxMatrix` object, which isn't actually read in -…
Comment: Best practice for handling large data (matrix with >2^31-1 non-zero elements) in
by
dan.gatti
•
0
Very strange. We have the same package versions.
I tried adding the mtx.class, type, and delayed arguments, but it's still making the coun…
Comment: DESeq2 for candidate gene analysis
by
piffelpaff
▴
20
thank you so much for answering Dr. Love!
Answer: DESeq2 for candidate gene analysis
by
Michael Love
43k
Your plan 1 is reasonable. Run DESeq2 on the whole dataset to obtain size factors and moderated dispersion estimates and then extract the u…
Comment: Best practice for handling large data (matrix with >2^31-1 non-zero elements) in
by
James W. MacDonald
68k
Oh.
```
> z <- read10xCounts(c(tmpdir, tmpdir), mtx.class = "SVT_SparseMatrix", delayed = TRUE)
> class(counts(z))
[1] "DelayedMatrix"
att…
Awards
• All
Popular Question to
Matej
•
0
Popular Question to
Gordon Smyth
53k
Popular Question to
Hervé Pagès
16k
Popular Question to
Josef Frank
•
0
Popular Question to
dan.gatti
•
0
Locations
• All
Finland, 23 minutes ago
United States, 25 minutes ago
United States, 1 hour ago
United States, 1 hour ago
WEHI, Melbourne, Australia, 2 hours ago
Finland, 23 minutes ago
United States, 25 minutes ago
United States, 1 hour ago
United States, 1 hour ago
WEHI, Melbourne, Australia, 2 hours ago
Traffic: 1692 users visited in the last hour
Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by the
version 2.3.6
version 2.3.6