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bed files
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0
votes
7
replies
2.2k
views
Compute average score across multiple bed files
chip-seq
granges
R
bed files
updated 5.8 years ago by
spotifywebplayer
• 0 • written 5.8 years ago by
jinseok
• 0
0
votes
0
replies
979
views
I need to measure distance of PAR-CLIP data to RNA regions
parclip
bedtools
bed files
gff3
6.3 years ago
linuxborg2
• 0
1
vote
1
reply
1.5k
views
Filtering a BED file according to genomic annotation
bed files
bedtools
filtering
chipseq
updated 6.3 years ago by
Aaron Lun
★ 28k • written 6.3 years ago by
rbronste
▴ 60
0
votes
1
reply
1.0k
views
getReadCountsFromBAM including bed information
cn.mops
bed files
getReadCountsFromBAM
6.8 years ago
Pau Marc Muñoz Torres
▴ 20
0
votes
1
reply
1.0k
views
Bioconductor RNA-seq bed file read-in/download then wavelet transform
bed files
wavelet
rna-seq
updated 7.1 years ago by
shepherl
3.9k • written 7.1 years ago by
whgsnp
• 0
0
votes
1
reply
1.3k
views
How to extract non-overlapping genes from a a bed file?
gene density
bed files
gff
7.7 years ago
birdguy.saikat
• 0
2
votes
3
replies
2.4k
views
import.bed fails on bed file with no scores
rtracklayer
import
bed files
8.1 years ago
jmr
• 0
0
votes
0
replies
991
views
customproDB: gene fusions
fusion
bed files
gene fusion
bed file
8.2 years ago
ramaniak
• 0
8 results • Page
1 of 1
Recent ...
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Answer: Mac ARM64 build report for BioC 3.19 from 'kjohnson3' reporting ERROR which it
by
Mike Smith
★ 6.5k
The other answers here are all good and demonstrate the issue with floating point comparisons nicely. I'd like to add that your particular…
Comment: More regions in union when increasing DBA$config$mergeOverlap
by
Ian D.
▴ 70
Nudging my question. I could do with confirmation before proceeding with my current projects. Thank you.
Comment: Extremely small p-values using Limma for proteomic data
by
Robert Castelo
★ 3.3k
From the point of view of visualization, I find handy the fact that raw p-values give more resolution than adjusted ones, which allows one …
Comment: deseq2 results
by
ATpoint
★ 4.1k
> the results are not satisfactory to me Well, what is your question? The DESeq2 vignette covers how to do analysis, and some diagnostics…
Comment: Extremely small p-values using Limma for proteomic data
by
ATpoint
★ 4.1k
It's not an implementation problem I am discussing (it's trivial obviously) -- more that for most purposes the y-axis metric should be the …
Votes
Answer: Mac ARM64 build report for BioC 3.19 from 'kjohnson3' reporting ERROR which it
Comment: Mac ARM64 build report for BioC 3.19 from 'kjohnson3' reporting ERROR which it
Answer: minfi latest update for EPIC V2 chip
A: Error in DESeqDataSet : some values in assay are not integers
Answer: Cannot connect to ExperimentHub server
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DevelopingHippo
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Robert Castelo
★ 3.3k
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Gyan Prakash Mishra
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50k
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