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bed files
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0
votes
7
replies
1.3k
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Compute average score across multiple bed files
chip-seq
granges
R
bed files
updated 4.5 years ago by
spotifywebplayer
• 0 • written 4.5 years ago by
jinseok
• 0
0
votes
0
replies
673
views
I need to measure distance of PAR-CLIP data to RNA regions
parclip
bedtools
bed files
gff3
5.0 years ago
linuxborg2
• 0
1
vote
1
reply
952
views
Filtering a BED file according to genomic annotation
bed files
bedtools
filtering
chipseq
updated 5.1 years ago by
Aaron Lun
★ 28k • written 5.1 years ago by
rbronste
▴ 60
0
votes
1
reply
707
views
getReadCountsFromBAM including bed information
cn.mops
bed files
getReadCountsFromBAM
5.6 years ago
Pau Marc Muñoz Torres
▴ 20
0
votes
1
reply
811
views
Bioconductor RNA-seq bed file read-in/download then wavelet transform
bed files
wavelet
rna-seq
updated 5.8 years ago by
shepherl
3.4k • written 5.8 years ago by
whgsnp
• 0
0
votes
1
reply
908
views
How to extract non-overlapping genes from a a bed file?
gene density
bed files
gff
6.4 years ago
birdguy.saikat
• 0
2
votes
3
replies
1.7k
views
import.bed fails on bed file with no scores
rtracklayer
import
bed files
6.8 years ago
jmr
• 0
0
votes
0
replies
743
views
customproDB: gene fusions
fusion
bed files
gene fusion
bed file
6.9 years ago
ramaniak
• 0
8 results • Page
1 of 1
Recent ...
Replies
Comment: edgeR: Usage of estimated dispersion from replicates for pools of the same exper
by
k.roelfs
• 0
I felt that my way of analyzing this data set was a bit unfortunate. I was not involved in the experimental design myself and am now trying…
Comment: edgeR: Usage of estimated dispersion from replicates for pools of the same exper
by
k.roelfs
• 0
For tissue T1 and each time point, each replicate corresponds to a single plant. For tissue T2, we actually had to sample 5 plants per rep…
Answer: edgeR: Usage of estimated dispersion from replicates for pools of the same exper
by
Gordon Smyth
47k
> Due to the high degree of heterozygosity of the plants used for the experiment, we thought it best to pool the same tissue under the same…
Comment: edgeR: Usage of estimated dispersion from replicates for pools of the same exper
by
Gordon Smyth
47k
How many plants are used for each of the biological replicate samples? One plant or a few?
Comment: edgeR: Usage of estimated dispersion from replicates for pools of the same exper
by
k.roelfs
• 0
Yes you are right, we have 24 RNA-seq libraries in total. The replicates come from the same population of plants, but independent from tho…
Votes
DESeq2 pairwise comparisons w/ 3 factors
A: DESeq2 pairwise comparisons w/ 3 factors
A: DESeq2 pairwise comparisons w/ 3 factors
Comment: MA plot
Comment: MA plot
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